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Pull requests: vivarium-collective/v2ecoli

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Pull requests list

migrate: nested studies → top-level registry + investigations as members
#478 opened Aug 7, 2026 by eagmon Member • Draft
fix: bake batch-array-entrypoint.sh into the image
#470 opened Aug 7, 2026 by AlexPatrie Collaborator Loading…
2 of 3 tasks
docs: rename sms-api references to viva-api
#453 opened Aug 4, 2026 by AlexPatrie Collaborator Loading…
1 task
Exit non-zero when every seed fails, so Batch reports FAILED not SUCCEEDED
#427 opened Jul 30, 2026 by AlexPatrie Collaborator Loading…
2 of 3 tasks
ci: un-quarantine composite-state coverage test (fixed in #381)
#385 opened Jul 26, 2026 by eagmon Member Loading…
Consensus elongation
#308 opened Jun 28, 2026 by arnabmutsuddy Collaborator • Draft
investigation: flagella transcriptional cascade (Kalir & Alon SUM-gate) — ported from vEcoli/biofilm
#276 opened Jun 20, 2026 by eagmon Member • Draft
6
Trna charging final
#273 opened Jun 18, 2026 by arnabmutsuddy Collaborator • Draft
investigation(dnaa): DnaA / replication-initiation (draft, re-opened off clean main)
#245 opened Jun 16, 2026 by eagmon Member • Draft
1
Add plasmid replication simulation layer (ColE1 / pBR322)
#10 opened Apr 14, 2026 by eagmon Member • Draft
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