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- moved the scripts package under the hivtrace namespace - appended `.py` to the script names where necessary - added a __main__.py file, defining the entrypoint functions - removed the scripts in setup.py and make them available as entrypoints - wrapped the code in hivnetworkannotate.py in functions - changed to relative imports, because the ad-hoc layout otherwise confuses pycharm - also did some very slight reformatting (add some indentation) in setup.py
TODO: some open questions - why the random.seed(), and where does it need to happen? it's happening twice now - once before parsing arguments - and once before doing the annotations - run_settings is global, and mutated by functions via side effects - this change does not immediately seem to break things - but there are no tests, so someone knowledgeable might want to check
FynnFreyer
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This relates to #42, and includes two commits:
For this one there are a few open questions
If only parts of this would be wanted, I can split these changes up into multiple commits, and you can cherry pick/whatever.
This doesn't include the commits in #41, but should be compatible without merge conflicts.