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Tools template - #830

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mira-miracoli wants to merge 5 commits into
usegalaxy-eu:masterfrom
mira-miracoli:tools-template
Open

Tools template#830
mira-miracoli wants to merge 5 commits into
usegalaxy-eu:masterfrom
mira-miracoli:tools-template

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@mira-miracoli

@mira-miracoli mira-miracoli commented Jul 5, 2023

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@mira-miracoli
mira-miracoli marked this pull request as draft July 5, 2023 08:07
@mira-miracoli
mira-miracoli marked this pull request as ready for review July 5, 2023 08:19
@domgz

domgz commented Jul 5, 2023

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I'll have a look at why TPV dry-run is failing and fix it.

@domgz

domgz commented Jul 5, 2023

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For any other readers: this PR cannot be merged yet because we found no container for SRMA.

Comment thread files/galaxy/tpv/tools.yml.j2 Outdated
Co-authored-by: José Manuel Domínguez <43052541+kysrpex@users.noreply.github.com>
@bgruening

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Are we trying to build a container for this tool? Should we just hide this tool? It seems it never worked, I can not find the JAR file.

@mira-miracoli

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I think building a container would be the cleanest solution. However I don't know how we handle this outside of biocontainers.
Letting it run in a python container could fix it, but is of course not the cleanest and most reproducible stategy.

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3 participants