Skip to content

Tools template#830

Open
mira-miracoli wants to merge 5 commits intousegalaxy-eu:masterfrom
mira-miracoli:tools-template
Open

Tools template#830
mira-miracoli wants to merge 5 commits intousegalaxy-eu:masterfrom
mira-miracoli:tools-template

Conversation

@mira-miracoli
Copy link
Copy Markdown
Contributor

@mira-miracoli mira-miracoli commented Jul 5, 2023

@mira-miracoli mira-miracoli marked this pull request as draft July 5, 2023 08:07
@mira-miracoli mira-miracoli marked this pull request as ready for review July 5, 2023 08:19
@kysrpex
Copy link
Copy Markdown
Contributor

kysrpex commented Jul 5, 2023

I'll have a look at why TPV dry-run is failing and fix it.

@kysrpex
Copy link
Copy Markdown
Contributor

kysrpex commented Jul 5, 2023

For any other readers: this PR cannot be merged yet because we found no container for SRMA.

Co-authored-by: José Manuel Domínguez <43052541+kysrpex@users.noreply.github.com>
@bgruening
Copy link
Copy Markdown
Member

Are we trying to build a container for this tool? Should we just hide this tool? It seems it never worked, I can not find the JAR file.

@mira-miracoli
Copy link
Copy Markdown
Contributor Author

I think building a container would be the cleanest solution. However I don't know how we handle this outside of biocontainers.
Letting it run in a python container could fix it, but is of course not the cleanest and most reproducible stategy.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants