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1. proteomics-pipelines proteomics-pipelines Public

   A repo with a proteogenomics and metaproteomics pipeline developed by Matthys Potgieter.

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2. 16S-rDNA-pipeline 16S-rDNA-pipeline Public

   This repository contains an older version of our 16S rDNA diversity analysis pipeline. It uses a combination of bash scripts. To get a more updated version of the pipeline using Nextflow please go …

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3. 16S-rDNA-dada2-pipeline 16S-rDNA-dada2-pipeline Public

   Forked from HPCBio/16S-rDNA-dada2-pipeline

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4. bacterial_variant_calling bacterial_variant_calling Public

   A pipeline for variant calling on bacterial genomes created with Nextflow and singularity / docker

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5. ngs-academy ngs-academy Public

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6. bst-sysadmin bst-sysadmin Public

   Scripts for maintaining services and setup on the bst.cbio.uct.ac.za server. Also contain some scripts to pull info from the BST Redmine instance.

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