OVO, an open-source ecosystem for de novo protein design
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Jul 13, 2026 - Python
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rfdiffusion
Here are 27 public repositories matching this topic...
Official repository for the ProteinDJ protein design pipeline
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Jul 10, 2026 - Python
A Nextflow pipeline for protein binder design
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Jul 31, 2026 - Python
De novo therapeutic peptide design pipeline using RFdiffusion and ESMFold to hallucinate NaV1.7 pain-channel blockers locally on CPU
bioinformatics drug-discovery protein-design cpu-inference generative-ai peptide-design esmfold rfdiffusion nav1-7
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Jun 23, 2026 - Python
A modular, extensible peptide design pipeline with target preparation, backbone generation, sequence design, scoring, and ranking. Full local CPU pipeline, and backend hooks for RFpeptides, ProteinMPNN/LigandMPNN, and ColabFold.
machine-learning bioinformatics computational-biology drug-discovery structure-prediction alphafold colabfold peptide-design rfdiffusion proteinmpnn
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Nov 28, 2025 - Python
De novo design of a miniprotein binder targeting the SARS-CoV-2 spike RBD using RFdiffusion, ProteinMPNN, and Rosetta. A step-by-step project integrating generative AI and structural bioinformatics.
drug-discovery protein-design structural-bioinformatics generative-ai rfdiffusion miniprotein-binder-rfdiffusion
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Aug 11, 2025 - Python
In-silico protein design bench: takes a target + epitope to designed, structurally validated, developable binders and multivalent scaffolds. Composes the binder-design, developability-hardening, and multivalent-display skills with the structure-model
structural-biology protein-design ai-agents claude de-novo-design alphafold rfdiffusion proteinmpnn binder-design claude-science
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Jul 13, 2026 - Python
Protein binder design GUI
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Apr 13, 2026 - Python
Auditable SciForge × BioGym de novo protein-design run: RFdiffusion → ProteinMPNN → Boltz-2
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Jul 15, 2026 - Python
RNA-seq counts to ranked de novo protein binder candidates, with full provenance back to the patient cohort.
bioinformatics rna-seq computational-biology reproducibility prov-o protein-design streamlit alphafold ro-crate boltz rfdiffusion proteinmpnn de-novo-binder-design
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Aug 2, 2026 - Python
Molecular dynamic simulation of RFdiffusion/ProteinMPNN designed HMERF mutated titin Ig152/Fn3-119 domain protein binder
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Feb 18, 2026 - Python
🧬 Lectures for course ML-protein-design
tensorflow pytorch biopython pymol rdkit modeller pytorch-geometric deepchem alphafold2 py3dmol colabfold rfdesign pyfoldx molgan trdesign rfdiffusion proteinmpnn colabdesign dmasif
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Dec 17, 2024 - Jupyter Notebook
구조 기반 de novo 항체 설계
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Aug 6, 2025 - Python
Manage protein design processes
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Apr 13, 2026 - Shell
Design proteins in your terminal. A TUI agent for de novo protein design — free by default.
go bioinformatics tui protein-design de-novo-design bubble-tea alphafold vllm llm-agent ollama rfdiffusion proteinmpnn
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May 26, 2026 - Go
Open-source production control plane for protein-design pipelines (RFdiffusion → ProteinMPNN → Boltz/AlphaFold2). Start here: architecture, docs, dev tooling.
rust bioinformatics gpu structural-biology workflow-engine grpc dag protein-design alphafold rfdiffusion proteinmpnn
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Jul 1, 2026 - Shell
Cross-Model CKA: EVO2/FAESM–RFdiffusion3 alignment reflects low-frequency smoothing bias, not structural convergence. Paper + full analysis pipeline.
machine-learning protein-structure computational-biology representation-learning esm interpretability cka rfdiffusion dna-language-model
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May 9, 2026 - Python
Auditable Codex skill for protein design, molecular docking, batch screening, provenance, and evidence-aware result review.
computational-biology protein-design molecular-docking autodock-vina diffdock rfdiffusion codex-skill
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Jul 24, 2026 - Python
UC Berkeley MSSE Capstone Project: Evaluating & refining filtering strategies for de novo protein binders
protein-structure filtering protein-design protein-protein-interaction protein-folding protein-binding denovo-design protein-expression binding-prediction rfdiffusion boltz2
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May 13, 2026 - Jupyter Notebook
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