Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Time-series analysis using the Matrix profile in Julia

Nanomotif - a tool for identifying methylated motifs in metagenomic samples

Motif manipulation functions for R.

Python package to plot sequence logos

surrogate quantitative interpretability for deepnets

ATaRVa - Analysis of Tandem Repeat Variation

Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

Bioinformatic approach to identify functional transcription factor binding motifs

A unified framework for discovering, analyzing, integrating, and visualizing regulatory motifs and transcription factor binding sites across bulk, single-cell, and long-read sequencing modalities.

Python bindings for the TFM-Pvalue program.

Time Series with Matrix Profile in Java

A proof-of-concept library for motif analysis using MDL techniques.

Efficient tool to query spatial pattern of spatial-modalities data

Visualizer for Motifs/Methylation in Tandem-Repeat Alleles

Discovering Leitmotifs in Multidimensional Time Series

Scripts for motif assessment for HOCOMOCO v10/v11.

Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7

A comprehensive protein analysis platform that combines motif detection with 3D structure validation using AlphaFold2 confidence scores. Designed for cancer biology research, drug discovery, and functional genomics.