live-cell-imaging

CellLocator: Automated live-cell image analysis for Incucyte®. Streamlined cell segmentation, fluorescence quantification, and kinetic analysis. Open-source and freely available under the MIT License.

Mammary cell shape computation over time with Trackmate-Cellpose

Python scripts and data analysis templates for the analysis of time-tag time-resolved flourescence (cross-) correlation data acquired in live cell experiments

The project measures axonal growth speed and direction during development. Conducted at IMCF Biocev in collaboration with Mitra Tavakoli, Institute of Biotechnology of the Czech Academy of Sciences.

Code and data associated with the manuscript "Engineering Programmable Tumor Microenvironment Interactions through Single-Cell Bioprinting of Spatially Defined Cell Microarrays"

Quantitative analysis of single-cell CAR-T and TIL killing kinetics from microwell co-culture imaging: EM mixture models for per-well kill rate, predator-prey ODE fits, and single-effector-cell statistics

CellScope detects cell boundaries, tracks cells across frames, and quantifies migration, morphology, and edge dynamics — with support for both single-cell and multi-cell recordings. It provides a complete GUI-based workflow from raw recordings to publication-ready figures and statistical comparisons.

ParticleStats: Open source software for the analysis of intracellular particle motility and cytoskeletal polarity

Several lectures on Cancer Systems Pharmacology for IGP Bioregulation II

N&B Machine — automated Number & Brightness analysis for Zeiss .lsm fluorescence movies (Python).

Eikon Therapeutics is a biopharmaceutical company (Nasdaq: EIKN) founded in 2019 and headquartered in Millbrae, California, with additional offices in New York and Jersey City. Eikon built a proprietary drug-discovery platform around single-molecule live-cell imaging, applying super-resolution fluorescence microscopy and high-throughput…