A tool for semi-automatic cell type classification
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May 22, 2026 - Python
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label-transfer
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Kidney papilla Visium + snRNA-seq reproduction (Canela et al. Nat Commun 2023): label transfer · stone vs control spatial DE · mineralization ROI. GEO GSE206306/GSE231569 · RunPod/Colab ready.
machine-learning bioinformatics geo systems-biology jupyter-notebook computational-biology kidney single-cell multi-omics google-colab spatial-transcriptomics nephrology scanpy visium spatial-omics runpod label-transfer nature-communications kidney-stone single-nucleus-rna-seq
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Jul 1, 2026 - Python
Consists of scripts and workflows used for single cell annotation
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Updated
Nov 12, 2023 - HTML
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