Identify and quantify MHC eluted peptides from mass spectrometry raw data
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May 21, 2026 - Nextflow
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immunopeptidomics
Here are 11 public repositories matching this topic...
DL model to predict HLA peptide presentation
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Jan 31, 2024 - Jupyter Notebook
Foundation model for MHC class I peptide binding prediction built on deep contrastive learning.
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Oct 22, 2025 - Python
PepQueryMHC: Rapid and Comprehensive Tumor Antigen Prioritization from Immunopeptidomics Data
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Feb 12, 2026 - Java
A pythonic library for analysing immunopeptidomic experiments
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Aug 8, 2022 - Python
An optimized rescoring pipeline for immunopeptidomics data
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Mar 23, 2026 - Python
Immunopeptidogenomics — cryptic peptide database construction from RNA-seq. An nf-core-style port of the 31-step IPG pipeline (Scull et al. Mol Cell Proteomics 2021), built for the Li and Purcell Labs at Monash University.
bioinformatics nextflow reproducible-research monash-university rnaseq pixi mhc mass-spectrometry hla cancer-research mutect2 stringtie nf-core cancer-immunotherapy gatk4 neoantigens star-aligner immunopeptidomics immunopeptidogenomics cryptic-peptides
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May 19, 2026 - C
Peptides motif search tool and Source protein mappers
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May 17, 2026 - HTML
Visualization of Immunopeptides Mapped to Source Proteins Across Multiple Samples
protein-sequences proteomics mass-spectrometry immunoinformatics lc-msms peptide-sequences immunopeptidomics
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Jul 3, 2025 - Jupyter Notebook
A rescoring module for DIA-NN identifications
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Feb 1, 2026 - Python
R codes for processing MS data
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Jul 9, 2024
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