Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
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Jan 23, 2026 - R
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direct-rna-sequencing
Here are 9 public repositories matching this topic...
Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
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Apr 4, 2024 - R
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
bioinformatics quality-control pipeline singularity alternative-splicing-analysis transcriptomics oxford-nanopore rna-editing differential-expression-analysis snakemake-pipeline novel-transcripts rna-modifications direct-rna-sequencing known-transcripts polya-tail-length-estimation
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Mar 17, 2025 - Python
tool for long read transcriptome assembly
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Aug 24, 2023 - Jupyter Notebook
RNA Modification Detection using Nanopore Direct RNA Sequencing via improved Transformer
interpretability nanopore-sequencing multiple-instance-learning direct-rna-sequencing rna-modification modification-detection
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Jan 8, 2026 - Jupyter Notebook
AI-agent-controllable desktop genome and transcriptome viewer. Native MCP server (43 tools) and embedded HTTP API let LLM assistants observe, drive, and analyse alongside the user. OpenGL rendering, 50+ built-in analyses, unified chromosome- and transcript-space (ribo-seq, direct RNA, long-read). Linux, Windows, macOS.
visualization bioinformatics opengl nanopore mcp dlang vcf desktop-application bigwig gtf bam ribosome-profiling genome-browser http-api long-read-sequencing direct-rna-sequencing ai-agent llm model-context-protocol transcriptome-browser
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May 20, 2026 - Python
Transcriptome-wide analysis of mRNA adenylation status in yeast using nanopore sequencing - materials accompanying the methods chapter
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Jan 30, 2023 - TeX
Demo data repo for workflow or function test
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Nov 28, 2025
Nanopore based RNA-Seq pipeline for viral samples
influenza oxford-nanopore rna-seq-pipeline nanopore-sequencing covid-19 sars-cov-2 direct-rna-sequencing
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Apr 6, 2020
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