Ejercicios bioinformáticos para el curso ofrecido en el posgrado del CIAD Mazatlán.
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Sep 11, 2025 - R
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16s-rrna-analysis
Here are 7 public repositories matching this topic...
16S microbiome analysis with Ampliseq - Nextflow introduction
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Jul 28, 2026 - Nextflow
Automated QIIME 2 pipeline for 16S rRNA gene amplicon analysis of the gingival microbiome in IBD research.
reproducible-research bioinformatics-pipeline ibd shell-script dada2 asv qiime2 16s-rrna-analysis oral-microbiota gingiva-microbiome
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Apr 4, 2026 - Shell
Metabarcoding ampliseq: uso de nf-core/ampliseq para realizar metabarcoding. Adaptado para correr local o en HPC.
nextflow metagenomics metabarcoding rrna its microbiome-analysis ampliseq dada2 amplicon-pipeline qiime2 16s-rrna 18s-rrna nextflow-pipeline amplicon-data-analysis 16s-rrna-analysis
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Jun 21, 2026 - Shell
R code & workflow for the JDR paper on oral microbiota transplant in dogs. Covers 16S rRNA gene sequence processing (DADA2), analysis (phyloseq), statistics, and animated plots (gganimate).
rstats microbiome-analysis phyloseq dada2 periodontitis oral-microbiota-transplant canine-microbiome 16s-rrna-analysis
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Aug 30, 2025 - R
A reproducible Snakemake workflow for 16S rRNA gene sequencing data analysis and visualization
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Jul 2, 2026 - R
Unsupervised learning of human microbiome community structure using HMPv13 dataset; PCoA, hierarchical clustering, and purity evaluation in R
bioinformatics clustering data-visualization microbiome unsupervised-learning vegan pcoa phyloseq open-science-project bray-curtis-distance 16s-rrna-analysis human-microbiome-project
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May 20, 2026 - HTML
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