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HTML repr for VczReader. - #426

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jeromekelleher merged 3 commits into
sgkit-dev:mainfrom
jeromekelleher:new-repr
Jun 5, 2026
Merged

HTML repr for VczReader.#426
jeromekelleher merged 3 commits into
sgkit-dev:mainfrom
jeromekelleher:new-repr

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Add __repr__ and _repr_html_ so evaluating a reader in a terminal,
log, or notebook surfaces the store, dimensions, and configured
selection/filter state. Both introspect private state and read only
metadata, so they never resolve the default sample selection.

Add a num_null_samples property reporting the count of null
(sample_id == "") entries, surfaced in both reprs.
Move the PLINK and BGEN format-reference pages out of the Command line
part into a new File formats part, shortening their titles to "PLINK 1"
and "BGEN", and add a lightweight VCF page so all three output formats
are documented together.
@jeromekelleher
jeromekelleher merged commit 4c7bbc2 into sgkit-dev:main Jun 5, 2026
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