[WIP] Pyro cell2location

[vitkl]

No description provided.

[adamgayoso]

Seems like a lot of comments but I don't think the model is that far off from being ready to go.

[vitkl]

Seems like a lot of comments but I don't think the model is that far off from being ready to go.

Thanks a lot for the feedback! It will take a while to address (because I also want to keep things consistent with main cell2location pymc3 repo) and some of it I think needs discussion - but good to have feedback!

[codecov]

Codecov Report

Merging #930 (7808c9a) into master (98f466a) will decrease coverage by 14.07%.
The diff coverage is 12.84%.

@@             Coverage Diff             @@
##           master     #930       +/-   ##
===========================================
- Coverage   90.64%   76.57%   -14.08%     
===========================================
  Files          91      103       +12     
  Lines        6908     8434     +1526     
===========================================
+ Hits         6262     6458      +196     
- Misses        646     1976     +1330     

Impacted Files	Coverage Δ
...external/cell2location/_cell2location_v2_module.py	0.00% <0.00%> (ø)
...ation/_cell2location_v3_no_factorisation_module.py	0.00% <0.00%> (ø)
...al/cell2location/_cell2location_v3_no_mg_module.py	0.00% <0.00%> (ø)
...external/cell2location/_cell2location_v4_module.py	0.00% <0.00%> (ø)
...cvi/external/cell2location/_reference_module_v2.py	0.00% <0.00%> (ø)
...external/cell2location/_cell2location_v3_module.py	15.57% <15.57%> (ø)
scvi/external/cell2location/autoguide.py	20.00% <20.00%> (ø)
scvi/external/cell2location/_reference_module.py	21.07% <21.07%> (ø)
scvi/external/cell2location/_base.py	23.07% <23.07%> (ø)
...external/cell2location/_cell2location_v1_module.py	24.40% <24.40%> (ø)
... and 16 more

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[vitkl]

Moved the model to https://github.com/BayraktarLab/cell2location/tree/master/cell2location/models and closing this PR

(accidentally closed and reopened a few times)