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Pull requests: scverse/rustar-aligner

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Pull requests list

chore(deps): bump dashmap from 6.1.0 to 6.2.1 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#76 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump chrono from 0.4.43 to 0.4.44 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#75 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump clap from 4.5.60 to 4.6.1 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#74 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump predicates from 3.1.3 to 3.1.4 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#73 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump docker/metadata-action from 6.0.0 to 6.1.0 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#72 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump env_logger from 0.11.8 to 0.11.10 dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#71 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump docker/login-action from 4.1.0 to 4.2.0 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#70 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump docker/setup-buildx-action from 4.0.0 to 4.1.0 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#69 opened May 22, 2026 by dependabot Bot Loading…
chore(deps): bump docker/build-push-action from 7.0.0 to 7.2.0 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#68 opened May 22, 2026 by dependabot Bot Loading…
chore: switch sam attributes to bitflags
#67 opened May 17, 2026 by flying-sheep Member Loading…
2
fix(stats): route reads exceeding --outFilterMultimapNmax to too_many_loci counter
#54 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
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1
fix(stitch): use sjdb_score in place of motif_score on annotated junctions
#52 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
fix: decode Gsj-region SA hits into split splice seeds
#51 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(stats): route no-seeds-no-clusters reads to UnmappedReason::Other
#49 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(sjdb): key SpliceJunctionDb in genome-absolute 0-based coordinates
#45 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
1
1
fix(output): move pass-1 SJ tab into <prefix>_STARpass1/SJ.out.tab
#44 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
1
1
feat(bam): emit XS:A: strand tag when --outSAMstrandField intronMotif
#43 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(bam): emit SAM-spec NM:i: tag distinct from STAR-internal nM:i:
#42 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
fix(transcriptome-bam): populate mate fields on paired-end records
#41 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
1
feat(bam): populate @PG header with PN/VN/CL fields
#40 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
1
1
fix(transcriptome-bam): write per-record RG:Z: tag matching @RG header
#39 opened May 12, 2026 by pinin4fjords Contributor Loading…
6 tasks done
1
1
fix(bam): subtract Phred+33 offset from QUAL before writing to BAM
#38 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
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fix(chimeric): create output parent directory before writing
#37 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
4
feat(params): accept --limitGenomeGenerateRAM for STAR CLI compatibility
#36 opened May 12, 2026 by pinin4fjords Contributor Loading…
5 tasks done
1
2
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