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359 Refactoring Configs for Gitlog - #365

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Michelle4929 wants to merge 11 commits into
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Michelle4929:359-refactor-gitlog-config
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359 Refactoring Configs for Gitlog#365
Michelle4929 wants to merge 11 commits into
sailuh:masterfrom
Michelle4929:359-refactor-gitlog-config

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@Michelle4929

@Michelle4929 Michelle4929 commented Feb 24, 2026

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Purpose

Refactoring gitlog configurations into taking 2 configurations (project vs analysis), more details in issue #359.

New Implementations

  1. Project: Configurations that typically do not change between analyses
  • kaiaulu_project.yml
  1. Analysis Specific: Configurations that do change depending on the analysis
  • analysis1.yml
  • analysis2.yml
  • analysisH.yml
  1. Changed Notebooks: These notebooks now read 2 configs
    Before: conf <- parse_config("../conf/helix.yml")
    After: project <- parse_config("../conf/kaiaulu_project.yml")
    analysis <- parse_config("../conf/analysisH.yml")
  • gitlog_showcase.Rmd
  • gitlog_entity_showcase.Rmd

@Michelle4929 Michelle4929 self-assigned this Feb 24, 2026
@Michelle4929 Michelle4929 changed the title #359 Refactoring Configs for Gitlog 359 Refactoring Configs for Gitlog Mar 15, 2026

@cfuke1 cfuke1 left a comment

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Was able to run on my machine with no issues and the refactored changes all look good to me.


```{r}
tool <- parse_config("../tools.yml")
conf <- parse_config("../conf/kaiaulu.yml")

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A lot of uncommenting, were these commented for a reason?

Comment thread conf/helix_immutable.yml Outdated
@@ -0,0 +1,82 @@
# -*- yaml -*-

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Far as I can tell helix and kaiaulu have the same format var order

Comment thread conf/analysis1.yml
@@ -0,0 +1,125 @@
# -*- yaml -*-

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Analysis 1 and 2 both share the same format

@john-a-flinn john-a-flinn left a comment

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What are the propose of the changes in the Rmd files? the ymls look fine

@john-a-flinn john-a-flinn left a comment

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Updated Rmd with comments, looks good

@Michelle4929 Michelle4929 linked an issue May 9, 2026 that may be closed by this pull request
7 tasks
Signed-off-by: Michelle4929 <giyoung7@hawaii.edu>
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Refactor Git Log Notebook Config

4 participants