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network_graph ! vertices contains duplicated vertex names

Status: Open.

#128 In saeyslab/multinichenetr;

· annaborchers opened on May 23, 2026

make_ligand_activity_target_plot fails when only one ligand is selected

Status: Open.

#127 In saeyslab/multinichenetr;

· KurayiChawatama opened on May 20, 2026

Typo In "MultiNicheNet analysis: MIS-C threewise comparison - step-by-step" Vignette

Status: Open.

#126 In saeyslab/multinichenetr;

· KurayiChawatama opened on May 14, 2026

Deprecation Warnings From S4Vectors:::anyMissing()

Status: Open.

#125 In saeyslab/multinichenetr;

· KurayiChawatama opened on May 13, 2026

Prioritization based only on ligand activity (ignoring ligand/receptor expression) in MultiNicheNet

Status: Open.

#124 In saeyslab/multinichenetr;

· donghyeon321 opened on Apr 20, 2026

Regarding dependency package version issues

Status: Open.

#123 In saeyslab/multinichenetr;

· PanSX-Dr opened on Dec 24, 2025

Error in get_DE_info when including batch as batch or covariate after F7-only subsetting

Status: Open.

#120 In saeyslab/multinichenetr;

· nourmh11 opened on Nov 19, 2025

Renaming input dataset (column name issue) and pseudobulk analysis output

Status: Open.

#119 In saeyslab/multinichenetr;

· jasoncrucify opened on Oct 31, 2025

Looking for support to make Differential intercellular Signaling Cascade between cell types with multinichenet

Status: Open.

#118 In saeyslab/multinichenetr;

· Bioanya opened on Oct 28, 2025

Looking for Support with the correct vignette to follow / contrast setting

Status: Open.

#117 In saeyslab/multinichenetr;

· Smeerlap opened on Oct 2, 2025

Change weights in favor of LR expression

enhancementNew feature or requestNew feature or request

Status: Open.

#101 In saeyslab/multinichenetr;

· CDSchuster opened on Dec 5, 2024

make_sample_lr_prod_activity_plots_Omnipath Has No Obvious Ordering

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#93 In saeyslab/multinichenetr;

· DarioS opened on Sep 25, 2024