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FileNotFoundError: [Errno 2] No such file or directory: 'snakemake'

Status: Open.

#295 In rhysnewell/aviary;

· liaohu1231 opened on Feb 7, 2026

spades_assembly.py NameError: name 'output' is not defined

Status: Open.

#294 In rhysnewell/aviary;

· Anna-MarieSeelen opened on Jan 28, 2026

Issue with Checkm on Dastool

Status: Open.

#292 In rhysnewell/aviary;

· aljazdzy opened on Jan 21, 2026

Error in refine step of metabat2

Status: Open.

#289 In rhysnewell/aviary;

· katkat-ri opened on Dec 9, 2025

pixi and checkm

Status: Open.

#288 In rhysnewell/aviary;

· michoug opened on Nov 16, 2025

The semibin_bins process has stalled

Status: Open.

#287 In rhysnewell/aviary;

· haihao999 opened on Oct 15, 2025

why is the abundance after running aviary recover much lower (around half) than expected?

Status: Open.

#282 In rhysnewell/aviary;

· wallywang123 opened on Jul 16, 2025

refine_dastool is stalling in aviary recover

Status: Open.

#280 In rhysnewell/aviary;

· Anna-MarieSeelen opened on Jun 10, 2025

Issues downloading DBs for aviary

Status: Open.

#277 In rhysnewell/aviary;

· tvtv195 opened on Jun 3, 2025

Suggestion to include leftover single reads in recover

Status: Open.

#276 In rhysnewell/aviary;

· Anna-MarieSeelen opened on May 22, 2025

Long Read Adapter Trimming in Aviary?

Status: Open.

#273 In rhysnewell/aviary;

· Anna-MarieSeelen opened on May 12, 2025

NanoPlot v1.41 ShapeError

Status: Open.

#272 In rhysnewell/aviary;

· rzhao-2 opened on Apr 29, 2025