omicsdatascience

All

11 repositories

multiomix
Public
Multiomix platform source code
python docker django bioinformatics epigenomics
TypeScript
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GNU General Public License v3.0
•2•8•0•4•Updated Feb 22, 2026Feb 22, 2026
xena-tcga-gtex-expression-analysis
Public
DEA pipeline comparing TCGA and GTEx (Xena) with ready-to-use pre-processed data. Includes high-performance scripts for extracting TCGA and GTEx data from the U…
R
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MIT License
•0•1•0•0•Updated Jan 30, 2026Jan 30, 2026
differential_expression_analysis
Public
tests of differential expression analysis
R
•0•0•0•0•Updated Dec 1, 2025Dec 1, 2025
sophie-mari
Public
Replication of the results of "Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines"
Python
•0•0•0•0•Updated Apr 7, 2025Apr 7, 2025
modulector
Public
An open platform which provides information about miRNAs and genes from different popular databases
gene-expression pubmed methylation mrna mirna mirna-mrna-interaction multiomix
Python
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MIT License
•0•5•0•0•Updated Jan 2, 2025Jan 2, 2025
BioAPI
Public
A powerful abstraction of gene databases
bioinformatics gene-expression gene-regulation gene-ontology drug-discovery genes bioinformatics-tool drug-target-interactions gene-enrichment gene-relationships
Python
•0•7•0•0•Updated Dec 17, 2024Dec 17, 2024
omicsdatascience-site-new
Public
Dockerfile
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
Benchmarks-GGCA-vs-WGCNA
Public
This benchmark measures the performance of correlation algorithms using transcriptomic data between GGCA and WGCNA tools
C
•0•0•0•0•Updated Nov 12, 2024Nov 12, 2024
multiomix-aws-emr
Public
AWS EMR Spark Job abstraction for Multiomix project.
Python
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MIT License
•0•1•0•0•Updated Nov 21, 2023Nov 21, 2023
omicsdatascience-site
Public
OmicsDatascience site source
TypeScript
•0•1•0•0•Updated Nov 3, 2023Nov 3, 2023
multiomix-backup-tool-gdrive
Public
A set of scripts in bash and python for generate multiomix backups and upload them into a google drive account.
Shell
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MIT License
•0•0•0•0•Updated Sep 27, 2023Sep 27, 2023