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@nmfs-ost Office of Science & Technology at NOAA Fisheries

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    103 repositories

    • asar

      Public
      Partially automate a U.S. stock assessment report.
      latexr-packagestock-assessment
      latexr-packagestock-assessmentquartostock-assessment-reportsnoaa-nsap
      R
      •
      MIT License
      •10•39•15•2•Updated Apr 10, 2026Apr 10, 2026

    • stockplotr

      Public
      R package that contains general tables and figures such as standard objects in an assessment report, and other important visualizations to interpret results of …
      R
      •
      Other
      •5•14•26•4•Updated Apr 10, 2026Apr 10, 2026

    • ss3-website

      Public
      SS3 Website
      stock-synthesisnoaa-nsap
      stock-synthesisnoaa-nsap
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•5•0•Updated Apr 9, 2026Apr 9, 2026

    • workflows-workshop

      Public
      Home to the agenda, materials, and communication for the stock assessment workflows workshops being held in 2026.
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•4•1•1•Updated Apr 9, 2026Apr 9, 2026

    • noaa-fit-resources

      Public
      Source code for the FIT software development resources
      CSS
      •
      The Unlicense
      •6•1•7•0•Updated Apr 8, 2026Apr 8, 2026

    • PAM_towed_array

      Public
      PAM Towed Arrays for NOAA Fisheries
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•8•0•Updated Apr 7, 2026Apr 7, 2026

    • Ecosystem-Simulation

      Public
      This is a github repo for the holistic simulation project. The goal of this project is to evaluate the relative performance of using random effects versus envir…
      R
      •0•0•0•0•Updated Apr 7, 2026Apr 7, 2026

    • ss3-doc

      Public
      Source code for the Stock Synthesis manual and other documentation
      latexstock-synthesisnoaa-nsap
      latexstock-synthesisnoaa-nsap
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •3•3•10•3•Updated Apr 7, 2026Apr 7, 2026

    • AA-SI_aalibrary

      Public
      A python library used for fetching acoustics data.
      Python
      •
      Apache License 2.0
      •2•6•0•0•Updated Apr 7, 2026Apr 7, 2026

    • ss3-source-code

      Public
      The source code for Stock Synthesis (SS3).
      fisheriesstockassessmentstock-synthesis
      fisheriesstockassessmentstock-synthesisnoaa-nsap
      C++
      •
      Creative Commons Zero v1.0 Universal
      •21•44•91•2•Updated Apr 6, 2026Apr 6, 2026

    • on-off-boarding

      Public
      Workflows for onboarding and offboarding collaborators to projects within NOAA Fisheries Office of Science and Technology
      noaa-nsap
      noaa-nsap
      SCSS
      •1•2•28•0•Updated Apr 3, 2026Apr 3, 2026

    • ghactions4r

      Public
      Reusable github actions workflows for R packages
      rnoaagithub-actions
      rnoaagithub-actionsnoaa-fisheries
      R
      •1•16•14•2•Updated Mar 30, 2026Mar 30, 2026

    • DisMAP

      Public
      The Distribution Mapping and Analysis Portal is a national web application which displays spatial distribution data for over 400 marine fish and macroinvertebra…
      noaa-nsap
      noaa-nsap
      Python
      •5•8•0•0•Updated Mar 30, 2026Mar 30, 2026

    • SSMSE

      Public
      Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)
      stock-synthesis
      stock-synthesis
      R
      •
      MIT License
      •12•21•26•0•Updated Mar 30, 2026Mar 30, 2026

    • ArcGIS2InPort

      Public
      Tool to convert ArcGIS XML to InPort XML
      XSLT
      •
      Apache License 2.0
      •0•0•2•0•Updated Mar 30, 2026Mar 30, 2026

    • PAM-Glider

      Public
      Summary of NOAA Fisheries PAM equipped Glider Research.
      SCSS
      •
      Creative Commons Zero v1.0 Universal
      •1•2•24•0•Updated Mar 27, 2026Mar 27, 2026

    • AA-SI_Calibration

      Public
      Calibration routines, formats, and information
      Apache License 2.0
      •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • journals

      Public
      Bibliography files for journals of interest to fisheries
      noaa-nsap
      noaa-nsap
      TeX
      •
      GNU General Public License v3.0
      •0•16•6•1•Updated Mar 23, 2026Mar 23, 2026

    • fishdictionary

      Public
      A dictionary scheme for fisheries
      R
      •
      GNU Affero General Public License v3.0
      •2•5•23•1•Updated Mar 20, 2026Mar 20, 2026

    • AA-SI_KMeans

      Public
      Performs inter-frequency K-Means clustering on acoustic data using echopype
      machine-learningtaxonomykmeans-clustering
      machine-learningtaxonomykmeans-clusteringexpirimentalechosounders
      Python
      •
      MIT License
      •0•0•2•0•Updated Mar 20, 2026Mar 20, 2026

    • workflows-guidebook

      Public
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Mar 13, 2026Mar 13, 2026

    • ss3-test-models

      Public
      Stock Synthesis models used for testing
      fisheriesstock-synthesisnoaa-nsap
      fisheriesstock-synthesisnoaa-nsap
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •1•3•13•0•Updated Mar 11, 2026Mar 11, 2026

    • ss3-user-examples

      Public
      Stock synthesis example models for users
      fisheriesstock-synthesisnoaa-nsap
      fisheriesstock-synthesisnoaa-nsap
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •5•2•8•0•Updated Mar 11, 2026Mar 11, 2026

    • AA-SI_Echoview

      Public
      Python programs and other files for AA-SI implementation of Echoview in a Windows cloud VM
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • PAM-Stocks

      Public
      Summary of NOAA-NMFS Passive Acoustic Monitoring- Stocks Research
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•2•0•Updated Mar 4, 2026Mar 4, 2026

    • AGEPRO-CoreLib

      Public
      AGEPRO CoreLib (Core Library) is a object-oriented helper library for AGEPRO-GUI, that is designed to handle data structures from AGEPRO VERSION 4.25 and AGEPRO…
      C#
      •
      Other
      •0•0•0•0•Updated Mar 4, 2026Mar 4, 2026

    • AGEPRO-GUI

      Public
      A redesign of the NOAA Fisheries National Fisheries Toolbox interface (by Alan Seaver). Includes AGEPRO Calculation Engine version 4.25.
      C#
      •
      Other
      •1•2•1•0•Updated Mar 4, 2026Mar 4, 2026

    • FIT_web_templating

      Public
      Templates and JSON model data for the toolbox web pages
      HTML
      •0•1•28•0•Updated Mar 4, 2026Mar 4, 2026

    • noaa-fit

      Public
      Repo for storing the hosted site of the NOAA Fisheries Integrated Toolbox
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • noaa-fit-dev

      Public
      Repo for holding rendered files for the development version of the FIT site.
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026
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