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    245 repositories

    • finufft

      Public
      Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU
      nfftnufft
      nfftnufft
      C++
      •
      Other
      •108•445•39•9•Updated Sep 25, 2026Sep 25, 2026

    • jaxmg

      Public
      JAXMg: A multi-GPU linear solver in JAX
      distributed-computingcudajax
      distributed-computingcudajax
      C++
      •
      Apache License 2.0
      •4•71•0•3•Updated Sep 24, 2026Sep 24, 2026

    • walnutpie

      Public
      Within-orbit Adaptive Leapfrog No-U-Turn Sampler
      samplingstanmcmc
      samplingstanmcmchmc
      C++
      •
      MIT License
      •4•66•15•3•Updated Sep 24, 2026Sep 24, 2026

    • nemos-documentation

      Public
      Host nemos docs build
      MIT License
      •0•0•0•0•Updated Sep 24, 2026Sep 24, 2026

    • nemos

      Public
      NEural MOdelS, a statistical modeling framework for neuroscience.
      Python
      •
      MIT License
      •24•144•118•8•Updated Sep 24, 2026Sep 24, 2026

    • spike-front

      Public
      Front end tool for benchmarking spike sorting algorithms.
      spikeforest
      spikeforest
      JavaScript
      •1•4•46•33•Updated Sep 24, 2026Sep 24, 2026

    • ManifoldEM

      Public
      Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•16•5•1•Updated Sep 23, 2026Sep 23, 2026

    • nixpack

      Public
      nix+spack = nixpack (spanix?)
      Nix
      •
      MIT License
      •6•54•1•4•Updated Sep 23, 2026Sep 23, 2026

    • ccq-software-build

      Public
      CCQ software build scripts
      Shell
      •7•14•0•0•Updated Sep 23, 2026Sep 23, 2026

    • CyclicCAE_public

      Public
      The public repository for the CyclicCAE conformational autoencoder. CyclicCAE encodes peptide macrocycle conformations in a low-dimensional latent space, usefu…
      pythoncpluspluscpp
      pythoncpluspluscppproteinsprotein-structurepython3autoencoderrosettapeptidesfolding
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated Sep 22, 2026Sep 22, 2026

    • adapol

      Public
      Adaptive Pole Fitting for Quantum Many-Body Physics
      Python
      •
      GNU General Public License v3.0
      •4•13•1•0•Updated Sep 22, 2026Sep 22, 2026

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result v…
      calcium-imagingmotion-correctionsource-extraction
      calcium-imagingmotion-correctionsource-extractiondeconvolution2-photoncnmf
      Python
      •
      GNU General Public License v2.0
      •399•738•90•12•Updated Sep 22, 2026Sep 22, 2026

    • cephdu

      Public
      A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling
      cephdisk-usagencdu
      cephdisk-usagencdu
      Rust
      •
      MIT License
      •0•3•3•0•Updated Sep 22, 2026Sep 22, 2026

    • neurosift

      Public
      Browser-based NWB visualization and DANDI exploration
      pypilivenwb
      pypilivenwbneurosiftdandi
      TypeScript
      •
      Apache License 2.0
      •19•65•54•3•Updated Sep 22, 2026Sep 22, 2026

    • stan-playground

      Public
      Run Stan models in the browser
      wasmlivestan
      wasmlivestanstan-playground
      TypeScript
      •
      Apache License 2.0
      •1•61•11•1•Updated Sep 22, 2026Sep 22, 2026

    • dmk

      Public
      A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution
      C++
      •
      Apache License 2.0
      •7•25•3•3•Updated Sep 21, 2026Sep 21, 2026

    • cryojax-ensemble-optimization

      Public
      Jupyter Notebook
      •
      MIT License
      •3•9•3•1•Updated Sep 21, 2026Sep 21, 2026

    • poet

      Public
      Perfectly Over Engineered Templates
      templatesmetaprogramminghigh-performance-computing
      templatesmetaprogramminghigh-performance-computingloop-unrollingkernel-dispatch
      C++
      •
      MIT License
      •0•7•0•0•Updated Sep 18, 2026Sep 18, 2026

    • flathub

      Public
      A simple elasticsearch frontend for serving astrophysical simulation catalog data
      Haskell
      •
      Apache License 2.0
      •8•11•14•0•Updated Sep 17, 2026Sep 17, 2026

    • ParticleMeshEwald.jl

      Public
      Particle mesh Ewald via NonuniformFFTs.jl
      Julia
      •
      MIT License
      •0•4•0•3•Updated Sep 15, 2026Sep 15, 2026

    • cryoSBI_classifier

      Public
      Python
      •0•0•0•0•Updated Sep 15, 2026Sep 15, 2026

    • nifty-ls

      Public
      A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
      time-serieslomb-scargle-periodogramspectral-analysis
      time-serieslomb-scargle-periodogramspectral-analysis
      Python
      •
      Apache License 2.0
      •8•53•10•2•Updated Sep 14, 2026Sep 14, 2026

    • nixpkgs

      Public
      Nix Packages collection & NixOS
      Nix
      •
      MIT License
      •20k•0•0•0•Updated Sep 14, 2026Sep 14, 2026

    • slurm

      Public
      Slurm: A Highly Scalable Workload Manager
      C
      •
      Other
      •890•1•0•0•Updated Sep 13, 2026Sep 13, 2026

    • jax-finufft

      Public
      JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
      C++
      •
      Apache License 2.0
      •11•141•9•4•Updated Sep 8, 2026Sep 8, 2026

    • disBatch

      Public
      Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
      distributed-computingbatch-processing
      distributed-computingbatch-processing
      Python
      •
      Apache License 2.0
      •10•50•7•0•Updated Sep 8, 2026Sep 8, 2026

    • jenkins-template

      Public
      Example and test repository for jenkins builds
      Groovy
      •0•0•0•0•Updated Sep 5, 2026Sep 5, 2026

    • FMM3D

      Public
      Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equatio…
      Fortran
      •
      Other
      •57•161•20•0•Updated Sep 5, 2026Sep 5, 2026

    • figpack

      Public
      A Python package for creating shareable, interactive, browser-based visualizations
      pypilivefigpack
      pypilivefigpack
      TypeScript
      •
      Apache License 2.0
      •2•16•9•0•Updated Sep 2, 2026Sep 2, 2026

    • numbl

      Public
      Numerical computing environment that aims to be compatible with Matlab
      TypeScript
      •
      Apache License 2.0
      •3•13•12•4•Updated Sep 2, 2026Sep 2, 2026
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