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@almlab Alm Laboratory

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    Repositories list

    18 repositories

    • PeanutAllergy_Microbiome

      Public
      The repo contains scripts for reproducing microbiome data analyses of ClinicalTrial ID #NCT02960074
      R
      •0•0•0•0•Updated May 28, 2026May 28, 2026

    • www

      Public
      website
      Python
      •4•0•0•0•Updated Feb 9, 2023Feb 9, 2023

    • GMbC_HGTs

      Public
      Scripts and data resources from the HGT analysis of GMbC isolate genomes
      1•6•0•0•Updated Jan 23, 2021Jan 23, 2021

    • dbotu3

      Public
      Distribution-based OTU calling
      Python
      •4•1•0•0•Updated Oct 10, 2019Oct 10, 2019

    • BIO-ML

      Public
      Command lines for the BIO-ML resources
      6•6•0•0•Updated Jul 13, 2019Jul 13, 2019

    • info

      Public
      Lab info, useful resources, and other common goods
      Jupyter Notebook
      •4•2•0•0•Updated Nov 19, 2018Nov 19, 2018

    • analysis-salt-responsive

      Public
      Analysis of 16S sequencing data for paper "Salt-responsive gut commensal modulates TH17 axis and disease"
      Python
      •2•0•0•0•Updated Sep 8, 2017Sep 8, 2017

    • cmit_Pipeline_MG

      Public
      Pipeline to process metagenomic sequencing data.
      Python
      •3•0•0•0•Updated Aug 26, 2017Aug 26, 2017

    • SmileTrain

      Public
      a 16s pipeline
      Python
      •
      MIT License
      •6•6•4•1•Updated Mar 21, 2017Mar 21, 2017

    • angst

      Public
      Analyzer of Gene and Species Trees
      Python
      •6•11•3•0•Updated Aug 8, 2016Aug 8, 2016

    • adaptml

      Public
      Automatically partition a phylogeny according to genetic and ecological data
      Python
      •3•4•5•0•Updated Jun 12, 2016Jun 12, 2016

    • texmexseq

      Public
      Treatment Effect eXplorer for Microbial Ecology eXperiments
      R
      •0•1•1•0•Updated May 27, 2016May 27, 2016

    • oeu

      Public
      R
      •0•0•0•0•Updated Feb 12, 2016Feb 12, 2016

    • microbiome-tracker

      Public archive
      Mobile-ready web app to track food habits of people
      Python
      •
      MIT License
      •0•1•9•0•Updated Oct 23, 2015Oct 23, 2015

    • meta-pipe

      Public
      metagenomic pipeline
      2•0•0•0•Updated Dec 19, 2014Dec 19, 2014

    • rf-classifier

      Public
      Wrapper for random forest classifier in python scikit-learn package.
      Python
      •1•0•0•0•Updated Dec 15, 2014Dec 15, 2014

    • adaptml-angst-server

      Public
      Web Server for AdaptML
      Python
      •
      MIT License
      •1•1•1•0•Updated Dec 1, 2014Dec 1, 2014

    • mystic

      Public
      Inferred biomass biogeochemical model of Mystic Lake
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Sep 9, 2014Sep 9, 2014
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