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@acorg Antigenic Cartography

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    109 repositories

    • dark-matter

      Public
      Virus discovery
      Python
      •
      MIT License
      •8•18•38•2•Updated Aug 19, 2026Aug 19, 2026

    • roessler_netzl_etal2026

      Public
      Repository containing data and code for the manuscript by Rössler, Netzl, et al. 2026
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 13, 2026Aug 13, 2026

    • predicting_influenza_using_convergence_ms_public

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 10, 2026Aug 10, 2026

    • Racmacs

      Public
      Racmacs R package for performing antigenic cartography
      JavaScript
      •
      GNU Affero General Public License v3.0
      •11•24•36•1•Updated Jul 8, 2026Jul 8, 2026

    • bermejo_netzl_et_al2025

      Public
      This repository contains the code and data for the manuscript by Bermejo, M., Netzl, A., et al. 2025
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 3, 2026Jul 3, 2026

    • lispmds

      Public
      LispMDS
      Common Lisp
      •
      GNU General Public License v2.0
      •2•1•7•1•Updated Jun 12, 2026Jun 12, 2026

    • NIAID_CEIRR_antigenic_cartography_workshop2025

      Public
      This repository contains all code for the NIAID CEIRR Training Program Antigenic Cartography Workshop July 9-10, 2025
      HTML
      •
      GNU General Public License v3.0
      •4•1•0•0•Updated May 28, 2026May 28, 2026

    • midtools

      Public
      Multiple Infection Detection - Python for detecting multiple infections from sequence reads and trying to pick them apart
      Python
      •1•1•3•5•Updated May 19, 2026May 19, 2026

    • ae

      Public
      acmacs-e
      C++
      •
      MIT License
      •2•0•0•0•Updated May 13, 2026May 13, 2026

    • acmacs-chart-2

      Public
      Accessing chart data
      C++
      •
      MIT License
      •1•0•0•0•Updated May 8, 2026May 8, 2026

    • beast2-xml

      Public
      Python code to generate BEAST2 XML files
      Python
      •
      MIT License
      •4•23•6•0•Updated May 6, 2026May 6, 2026

    • acmacs-map-draw

      Public
      Drawing antigenic maps
      C++
      •
      MIT License
      •1•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • acmacs-whocc-data

      Public
      Data files with WHO CC related data and library to read them
      C++
      •
      MIT License
      •1•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • mapdeduce

      Public
      Testing amino acid polymorphisms associated with regions in antigenic space
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 26, 2026Feb 26, 2026

    • acorgdb

      Public
      Python tools for interacting with antigen, sera and titration databases.
      Python
      •0•3•2•0•Updated Feb 24, 2026Feb 24, 2026

    • receptor-binding-sites

      Public
      Depositing information and structures related to location of receptor binding sites in various HA structures
      Promela
      •1•0•0•0•Updated Jan 4, 2026Jan 4, 2026

    • ESFLU_antigenic_cartography_training_school_2025

      Public
      This repository contains the materials for the 2025 ESFLU training school on antigenic cartography
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 17, 2025Oct 17, 2025

    • netzl_et_al2025

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • acorgdb-table-editor

      Public
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • seqgen

      Public
      Python code for generating sequences in FASTA format
      Python
      •
      MIT License
      •1•0•0•1•Updated Jan 25, 2025Jan 25, 2025

    • roessler_netzl_et_al2024

      Public
      Code repository for the non-human primate antigenic cartography manuscript by Rössler, Netzl, et al. 2024
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • acmacs-build

      Public
      Makefile
      •
      MIT License
      •1•2•0•0•Updated Nov 5, 2024Nov 5, 2024

    • slurm-pipeline

      Public
      A Python class for scheduling SLURM jobs
      Python
      •
      MIT License
      •11•61•2•0•Updated Oct 26, 2024Oct 26, 2024

    • ncbi-taxonomy-database

      Public
      How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher
      Shell
      •
      MIT License
      •2•7•1•0•Updated Oct 11, 2024Oct 11, 2024

    • seqdb-3

      Public
      Set of tools to build and query sequence database v3
      C++
      •
      MIT License
      •1•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • acmacs-virus

      Public
      Modules to handle virus and influenza related stuff, e.g. virus names, passages, reassortant information
      C++
      •
      MIT License
      •1•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • acmacs-draw

      Public
      Drawing on an image
      C++
      •
      MIT License
      •1•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • acmacs-tal

      Public
      Tree et al.
      C++
      •
      MIT License
      •1•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • acmacs-whocc

      Public
      Programs and scripts for WHO CCs chains
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • antigenic_cartography_introduction

      Public
      HTML
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Sep 2, 2024Sep 2, 2024
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