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    63 repositories

    • xiFDR

      Public
      Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs
      Java
      •
      Apache License 2.0
      •6•7•13•0•Updated Aug 6, 2026Aug 6, 2026

    • KlinkPPI

      Public
      Combining different ppi databases
      Python
      •0•0•0•0•Updated Jul 29, 2026Jul 29, 2026

    • crosslinking-api

      Public
      xiview-api provides REST endpoints to access crosslinking resources in PRIDE
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated Jul 24, 2026Jul 24, 2026

    • xiview-server

      Public
      HTML
      •
      Apache License 2.0
      •4•0•1•0•Updated Jul 24, 2026Jul 24, 2026

    • xiview

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •7•4•8•0•Updated Jul 24, 2026Jul 24, 2026

    • MetaXtract

      Public
      MetaXtract is a Windows-based tool for extracting and visualizing metadata from Thermo RAW files
      HTML
      •
      Apache License 2.0
      •2•2•0•0•Updated Jul 23, 2026Jul 23, 2026

    • xicommon

      Public
      common library used by python projects working with mass-spectrometric data
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•1•Updated Jul 22, 2026Jul 22, 2026

    • xiFDR-py

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•2•1•Updated Jul 16, 2026Jul 16, 2026

    • mzidentml-reader

      Public
      Python
      •
      Apache License 2.0
      •8•2•3•0•Updated Jul 15, 2026Jul 15, 2026

    • sample-tracker

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 13, 2026Jul 13, 2026

    • XiSearch

      Public
      XiSearch
      Java
      •
      Apache License 2.0
      •7•18•26•2•Updated Jun 10, 2026Jun 10, 2026

    • polars-free-threaded

      Public
      Rust
      •
      Other
      •0•0•0•3•Updated Jun 2, 2026Jun 2, 2026

    • build-xiview

      Public
      JavaScript
      •
      GNU General Public License v3.0
      •2•3•19•0•Updated Jun 1, 2026Jun 1, 2026

    • VolcaConvert

      Public
      CSS
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • VolcaNoseR

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • diann-weblauncher

      Public
      TypeScript
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • pyside-free-threaded

      Public
      C++
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • xiview-k8s

      Public
      TypeScript
      •0•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • orjson-free-threaded

      Public
      Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy
      Python
      •
      Apache License 2.0
      •327•0•0•0•Updated Apr 11, 2026Apr 11, 2026

    • mzIdentML-polars

      Public
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 11, 2026Apr 11, 2026

    • zipfile-deflate64

      Public
      Extract Deflate64 ZIP archives with Python's `zipfile` API.
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • denoising

      Public
      Spectra denoising
      Jupyter Notebook
      •1•0•0•1•Updated Apr 3, 2026Apr 3, 2026

    • xi2annotator

      Public
      xisearch-annotator Mass spectrometry spectrum annotation web service for single and crosslinked peptides
      Python
      •
      GNU Lesser General Public License v3.0
      •1•0•0•0•Updated Mar 13, 2026Mar 13, 2026

    • xiSPEC_spectrumViewer

      Public
      JavaScript
      •
      Apache License 2.0
      •4•1•2•0•Updated Feb 20, 2026Feb 20, 2026

    • crosslink-viewer

      Public
      web based visualisation of CLMS data
      JavaScript
      •
      Apache License 2.0
      •10•0•3•0•Updated Feb 20, 2026Feb 20, 2026

    • CLMS-model

      Public
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • xiUtilities

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • ms-decarrier

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 25, 2025Dec 25, 2025

    • xiRESCORE

      Public
      Machine learning based approach to crosslink mass spectrometry rescoring
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•3•1•Updated Nov 23, 2025Nov 23, 2025

    • AlphaLink2

      Public
      AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
      Python
      •
      Creative Commons Attribution 4.0 International
      •21•69•34•1•Updated Aug 26, 2025Aug 26, 2025
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