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    11 repositories

    • ProHap_PeptideAnnotator

      Public
      Pipeline to annotate peptide identifications when using protein databases made by of ProHap / ProVar
      Python
      •
      MIT License
      •0•3•0•0•Updated Mar 2, 2026Mar 2, 2026

    • ProHapExplorer

      Public
      Svelte
      •
      MIT License
      •0•1•0•0•Updated Nov 5, 2025Nov 5, 2025

    • ProHap_Graph

      Public
      Pipeline to transform the ProHap / ProVar files and PSM lists into a Neo4j graph database
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 11, 2025Oct 11, 2025

    • ProHap

      Public
      Proteogenomics database-generation tool for protein haplotypes and variants
      haplotypesproteogenomicsprotein-database-generation
      haplotypesproteogenomicsprotein-database-generation
      Python
      •
      MIT License
      •4•12•4•0•Updated Jun 19, 2025Jun 19, 2025

    • peptides-modifications-matching

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • ProHapDatabaseAnalysis

      Public
      Pipeline to analyze protein databases created by ProHap / ProVar
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

    • PeptideShaker_tutorial

      Public
      Tutorial for the navigation of proteomics identification results using PeptideShaker.
      0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • py-pgatk-prohap

      Public
      Python tools for proteogenomics analysis toolkit
      Python
      •
      Apache License 2.0
      •14•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • FindingHaploSignatures

      Public
      Code related to the "Finding Haplotypic Signatures in Proteins" publication
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • VariantPeptideIdentification

      Public
      Code related to the "Retention time and fragmentation predictors increase confidence in identification of common variant peptides" publication
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 4, 2023Aug 4, 2023

    • py-pgatk-UiB-fork

      Public
      Python tools for proteogenomics analysis toolkit
      Python
      •
      Apache License 2.0
      •14•0•0•0•Updated Jun 12, 2023Jun 12, 2023
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