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@EddyRivasLab The Eddy/Rivas Laboratory

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    14 repositories

    • infernal

      Public
      RNA secondary structure/sequence profiles for homology search and alignment
      C
      •
      Other
      •31•128•3•0•Updated Mar 20, 2026Mar 20, 2026

    • eddyrivaslab.github.io

      Public
      HTML
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • eddyrivaslab.github.io-src

      Public
      CSS
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • hmmer

      Public
      HMMER: biological sequence analysis using profile HMMs
      C
      •
      Other
      •90•404•18•3•Updated Feb 16, 2026Feb 16, 2026

    • easel

      Public
      Sequence analysis library used by Eddy/Rivas lab code
      C
      •
      Other
      •31•52•3•2•Updated Feb 16, 2026Feb 16, 2026

    • R-scape

      Public
      RNA Structural Covariation Above Phylogenetic Expectation
      C
      •
      Other
      •3•18•1•2•Updated Dec 12, 2025Dec 12, 2025

    • tornado

      Public
      A general purpose parser to produce grammars of single-sequence RNA secondary structure
      C
      •
      Other
      •3•5•0•0•Updated Dec 11, 2025Dec 11, 2025

    • R-scape-web

      Public
      RNA Structure-driven Covariation Above Phylogenetic Expectation (web application)
      JavaScript
      •1•3•0•0•Updated Oct 29, 2025Oct 29, 2025

    • labbib

      Public
      Lab's BibTex bibliography, and tools
      TeX
      •0•1•0•0•Updated Oct 10, 2025Oct 10, 2025

    • infernal.org

      Public
      Infernal's web page
      HTML
      •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • hmmer.org

      Public
      HMMER home page
      HTML
      •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • null-model

      Public
      Repository to hold work on a new null model for HMMER and Infernal
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Feb 5, 2021Feb 5, 2021

    • ssu-align

      Public
      Structural alignment of SSU rRNA sequences
      PostScript
      •0•6•0•0•Updated May 5, 2020May 5, 2020

    • PKNOTS

      Public
      A dynamic programming algorithm for RNA pseudoknot prediction
      C
      •
      Other
      •1•0•0•0•Updated Jan 30, 2020Jan 30, 2020
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