Repositories list

• multi-package-containers

  Public

  BioContainers/multi-package-containers’s past year of commit activity
  Testing building mulled containers for multi-requirement tools.

  dockercontainers

  dockercontainers

  236236 forks•8484 stars•33 issues•121121 pull requests•Updated Apr 7, 2026Apr 7, 2026

• containers

  Public

  BioContainers/containers’s past year of commit activity
  Bioinformatics containers

  dockerfilesbioinformaticsdocker-image+ 4

  dockerfilesbioinformaticsdocker-imagerktbioinformatics-containersbiocontainers-architecturebioinformatics-analysis

  Dockerfile

  •

  Apache License 2.0

  •267267 forks•784784 stars•4141 issues•1111 pull requests•Updated Mar 30, 2026Mar 30, 2026

• registry

  Public

  BioContainers/registry’s past year of commit activity
  Docker for Bioinformatics

  vuejsvuebiodocker+ 1

  vuejsvuebiodockerbiocontainers-web

  Vue

  •

  Apache License 2.0

  •1515 forks•2020 stars•1414 issues•1818 pull requests•Updated Mar 27, 2026Mar 27, 2026

• singularity-build-bot

  Public

  BioContainers/singularity-build-bot’s past year of commit activity
  Nightly build of Singularity containers

  Python

  •33 forks•88 stars•11 issue•00 pull requests•Updated Mar 15, 2026Mar 15, 2026

• ci

  Public

  BioContainers/ci’s past year of commit activity
  Continuous integrations scripts for biocontainers

  Python

  •11 fork•00 stars•55 issues•44 pull requests•Updated Nov 10, 2025Nov 10, 2025

• bioconda2biocontainer

  Public

  BioContainers/bioconda2biocontainer’s past year of commit activity
  BioContainers API client

  Python

  •

  Other

  •00 forks•33 stars•11 issue•00 pull requests•Updated Sep 25, 2025Sep 25, 2025

• edu

  Public

  BioContainers/edu’s past year of commit activity
  BioContainers Documentation.

  documentationcontainerstravis+ 4

  documentationcontainerstravisreadthedocsbiocondabiocontainersdocumentation-code

  JavaScript

  •2323 forks•77 stars•22 issues•22 pull requests•Updated Jul 25, 2024Jul 25, 2024

• biocontainers-backend

  Public

  BioContainers/biocontainers-backend’s past year of commit activity
  Python backend for Biocontainers (Flask + MongoDB)

  rest-apirestful-apiga4gh+ 2

  rest-apirestful-apiga4ghga4gh-serverbiocontainers

  Python

  •

  Apache License 2.0

  •11 fork•55 stars•77 issues•22 pull requests•Updated Apr 8, 2024Apr 8, 2024

• mulled

  Public
  Mulled - Automatized Containerized Software Repository

  dockerbioinformaticsrkt+ 2

  dockerbioinformaticsrktmulledinvolucro

  3838 forks•6767 stars•33 issues•1414 pull requests•Updated Mar 18, 2024Mar 18, 2024

• specs

  Public

  BioContainers/specs’s past year of commit activity
  BioContainers specifications

  dockerbioinformaticsspecifications+ 6

  dockerbioinformaticsspecificationsrktbiocontainers-specificationbiocontainersbioinformatics-containersbiocontainers-architecturebioinformatics-analysis

  Apache License 2.0

  •1111 forks•5252 stars•33 issues•00 pull requests•Updated Mar 1, 2023Mar 1, 2023

• tools-metadata

  Public
  Repository to storage clean metadata of the containers in biocontainers registry

  Python

  •

  Apache License 2.0

  •55 forks•44 stars•55 issues•00 pull requests•Updated Jan 19, 2021Jan 19, 2021

• backup-scripts

  Public
  scritps for different backups in biocontainers

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 2, 2020Jun 2, 2020

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •3.8k3.8k forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2020Apr 21, 2020

• workflows

  Public
  Bioinformatics curated workflows that use Biocontainers tools

  bioinformaticsbioinformatics-pipelineworkflows

  bioinformaticsbioinformatics-pipelineworkflows

  Apache License 2.0

  •44 forks•1919 stars•00 issues•00 pull requests•Updated Jun 11, 2019Jun 11, 2019

• registry-web-dev

  Public archive
  BioContainers Registry UI, hosted in http://biocontainers.pro

  Vue

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 6, 2019Mar 6, 2019

• tool-registry-service-schemas

  Public
  APIs for discovering genomics tools, their metadata and their containers

  Shell

  •

  Apache License 2.0

  •1919 forks•00 stars•00 issues•00 pull requests•Updated Nov 26, 2018Nov 26, 2018

• registry-backend-deprecated

  Public archive
  Java

  •

  Apache License 2.0

  •11 fork•00 stars•66 issues•00 pull requests•Updated Oct 9, 2018Oct 9, 2018

• service-containers

  Public
  Repository containing Services that can be deploy using Containers technologies (Docker Compose, Heml)

  00 forks•11 star•11 issue•00 pull requests•Updated Sep 20, 2018Sep 20, 2018

• biotools-bioconda-ids

  Public
  Mapping scripts between bioconda and biotools IDs

  Jupyter Notebook

  •44 forks•11 star•00 issues•11 pull request•Updated Mar 23, 2018Mar 23, 2018

• containers-ci-system

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2018Feb 2, 2018

• kubernetes-init

  Public
  Shell

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 10, 2017Nov 10, 2017

• workshops

  Public
  Repository for BioContainers Hackthons and Workshops

  bioinformaticsworkshopmaterials+ 2

  bioinformaticsworkshopmaterialscontainershackthon

  JavaScript

  •

  Apache License 2.0

  •33 forks•22 stars•00 issues•11 pull request•Updated Oct 10, 2017Oct 10, 2017

• auto-mulled

  Public
  Generating Docker containers from bioconda on the fly with Travis cron-job feature.

  MIT License

  •33 forks•55 stars•33 issues•00 pull requests•Updated Jun 23, 2017Jun 23, 2017

• software-archive

  Public
  Binary and source code archive

  internalbioinformaticsbinaries+ 1

  internalbioinformaticsbinariesbinary-data

  00 forks•00 stars•11 issue•00 pull requests•Updated Feb 7, 2017Feb 7, 2017

• local-containers

  Public
  This repository contains all the containers that can't be deploy in public registries or need customs settings

  docker-imagebiocontainersprivate-cotainers

  docker-imagebiocontainersprivate-cotainers

  Shell

  •11 fork•11 star•00 issues•00 pull requests•Updated Oct 13, 2016Oct 13, 2016

• tools

  Public
  Tools used for the management of the repositories

  Shell

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 4, 2015Oct 4, 2015