BioContainers

All

26 repositories

multi-package-containers
Public
Testing building mulled containers for multi-requirement tools.
docker containers
232•83•3•121•Updated Jan 5, 2026Jan 5, 2026
registry
Public
Docker for Bioinformatics
vuejs vue biodocker biocontainers-web
Vue
•
Apache License 2.0
•15•20•14•14•Updated Dec 31, 2025Dec 31, 2025
ci
Public
Continuous integrations scripts for biocontainers
Python
•1•0•5•4•Updated Nov 10, 2025Nov 10, 2025
containers
Public
Bioinformatics containers
dockerfiles bioinformatics docker-image rkt bioinformatics-containers biocontainers-architecture bioinformatics-analysis
Dockerfile
•
Apache License 2.0
•261•766•41•12•Updated Oct 31, 2025Oct 31, 2025
bioconda2biocontainer
Public
BioContainers API client
Python
•
Other
•0•3•1•0•Updated Sep 25, 2025Sep 25, 2025
singularity-build-bot
Public
Nightly build of Singularity containers
Python
•3•6•1•0•Updated Jun 27, 2025Jun 27, 2025
edu
Public
BioContainers Documentation.
documentation containers travis readthedocs bioconda biocontainers documentation-code
JavaScript
•23•7•2•2•Updated Jul 25, 2024Jul 25, 2024
biocontainers-backend
Public
Python backend for Biocontainers (Flask + MongoDB)
rest-api restful-api ga4gh ga4gh-server biocontainers
Python
•
Apache License 2.0
•1•4•7•2•Updated Apr 8, 2024Apr 8, 2024
mulled
Public
Mulled - Automatized Containerized Software Repository
docker bioinformatics rkt mulled involucro
38•66•3•14•Updated Mar 18, 2024Mar 18, 2024
specs
Public
BioContainers specifications
docker bioinformatics specifications rkt biocontainers-specification biocontainers bioinformatics-containers biocontainers-architecture bioinformatics-analysis
Apache License 2.0
•11•52•3•0•Updated Mar 1, 2023Mar 1, 2023
tools-metadata
Public
Repository to storage clean metadata of the containers in biocontainers registry
Python
•
Apache License 2.0
•5•4•5•0•Updated Jan 19, 2021Jan 19, 2021
backup-scripts
Public
scritps for different backups in biocontainers
Python
•
Apache License 2.0
•0•0•1•0•Updated Jun 2, 2020Jun 2, 2020
bioconda-recipes
Public
Conda recipes for the bioconda channel.
Shell
•3.7k•0•0•0•Updated Apr 21, 2020Apr 21, 2020
workflows
Public
Bioinformatics curated workflows that use Biocontainers tools
bioinformatics bioinformatics-pipeline workflows
Apache License 2.0
•4•19•0•0•Updated Jun 11, 2019Jun 11, 2019
registry-web-dev
Public archive
BioContainers Registry UI, hosted in http://biocontainers.pro
Vue
•
Apache License 2.0
•1•0•0•0•Updated Mar 6, 2019Mar 6, 2019
tool-registry-service-schemas
Public
APIs for discovering genomics tools, their metadata and their containers
Shell
•
Apache License 2.0
•18•0•0•0•Updated Nov 26, 2018Nov 26, 2018
registry-backend-deprecated
Public archive
Java
•
Apache License 2.0
•1•0•6•0•Updated Oct 9, 2018Oct 9, 2018
service-containers
Public
Repository containing Services that can be deploy using Containers technologies (Docker Compose, Heml)
0•1•1•0•Updated Sep 20, 2018Sep 20, 2018
biotools-bioconda-ids
Public
Mapping scripts between bioconda and biotools IDs
Jupyter Notebook
•4•1•0•1•Updated Mar 23, 2018Mar 23, 2018
containers-ci-system
Public
Shell
•0•0•0•0•Updated Feb 2, 2018Feb 2, 2018
kubernetes-init
Public
Shell
•0•1•0•0•Updated Nov 10, 2017Nov 10, 2017
workshops
Public
Repository for BioContainers Hackthons and Workshops
bioinformatics workshop materials containers hackthon
JavaScript
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Apache License 2.0
•3•2•0•1•Updated Oct 10, 2017Oct 10, 2017
auto-mulled
Public
Generating Docker containers from bioconda on the fly with Travis cron-job feature.
MIT License
•3•5•3•0•Updated Jun 23, 2017Jun 23, 2017
software-archive
Public
Binary and source code archive
internal bioinformatics binaries binary-data
0•0•1•0•Updated Feb 7, 2017Feb 7, 2017
local-containers
Public
This repository contains all the containers that can't be deploy in public registries or need customs settings
docker-image biocontainers private-cotainers
Shell
•1•1•0•0•Updated Oct 13, 2016Oct 13, 2016
tools
Public
Tools used for the management of the repositories
Shell
•
Apache License 2.0
•0•0•0•0•Updated Oct 4, 2015Oct 4, 2015