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19 repositories

BgeeCall
Public
Source code of the BgeeCall R package, for automatic RNA-Seq present/absent gene expression calls generation
rna-seq biology gene-expression
rna-seq biology gene-expression scrna-seq rna-seq-libraries intergenic-regions gene-level present-absent-calls
R
•
GNU General Public License v3.0
•2•5•1•0•Updated Aug 7, 2026Aug 7, 2026
bgee_web
Public
React code of the Bgee frontend
reactjs biology gene-expression
reactjs biology gene-expression
JavaScript
•
Creative Commons Zero v1.0 Universal
•5•1•0•0•Updated Aug 5, 2026Aug 5, 2026
bgee_pipeline
Public
Source code of the Bgee pipeline used to build the Bgee database
python java gene
python java gene rna-seq pipeline makefile biology perl gene-expression expression
Perl
•
Creative Commons Zero v1.0 Universal
•3•12•0•0•Updated Aug 3, 2026Aug 3, 2026
tools-iuc
Public
Tool Shed repositories maintained by the Intergalactic Utilities Commission
HTML
•
MIT License
•518•0•0•1•Updated Jul 30, 2026Jul 30, 2026
expression-annotations-documents
Public
Bgee Expression Annotations documentation
Jupyter Notebook
•1•1•0•0•Updated Jul 20, 2026Jul 20, 2026
bgee_apps
Public
Source code of the Java Bgee applications
java biology gene-expression
java biology gene-expression
Java
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Creative Commons Zero v1.0 Universal
•1•2•0•3•Updated Jul 15, 2026Jul 15, 2026
BgeeDB_R
Public
Source code of the R packge BgeeDB to use data from the Bgee database
bioinformatics rna-seq scrna-seq
bioinformatics rna-seq scrna-seq single-cell enrichment-analysis
R
•
GNU General Public License v3.0
•7•16•1•1•Updated May 7, 2026May 7, 2026
sparql-examples
Public
A set of SPARQL examples that are used in different SIB resources
HTML
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Other
•36•0•0•0•Updated Apr 29, 2026Apr 29, 2026
workshop_bc2
Public
HTML
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Creative Commons Zero v1.0 Universal
•0•0•0•0•Updated Sep 16, 2025Sep 16, 2025
Biodiversity-Bioinformatics
Public
Biodiversity Bioinformatics
R
•0•0•0•0•Updated Aug 13, 2025Aug 13, 2025
bgee
Public
Project hosting resources used for developing Bgee.
GNU General Public License v3.0
•0•1•0•0•Updated Feb 3, 2025Feb 3, 2025
anatomical-similarity-annotations
Public
Project hosting resources used for annotating relations of similarity between anatomical structures
Makefile
•
Creative Commons Zero v1.0 Universal
•2•2•18•0•Updated Feb 3, 2025Feb 3, 2025
Wikidata_BgeeDB-bot
Public
The BgeeDB Wikidata bot
Python
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Creative Commons Zero v1.0 Universal
•0•1•0•0•Updated Feb 3, 2025Feb 3, 2025
reference_intergenic_standalone
Public
standalone scripts allowing to generate reference intergenic sequences for species not present in Bgee
R
•1•2•0•0•Updated Feb 3, 2025Feb 3, 2025
homology-ontology
Public
Home for the ontology of homology and related concepts in biology
biology ontology uberon
biology ontology uberon homology obofoundry
Makefile
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Creative Commons Zero v1.0 Universal
•1•0•2•1•Updated Feb 3, 2025Feb 3, 2025
confidence-information-ontology
Public
Repository of the Confidence Information Ontology (CIO)
ontology obofoundry confidence-score
ontology obofoundry confidence-score
Perl
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Creative Commons Zero v1.0 Universal
•2•5•0•0•Updated Feb 3, 2025Feb 3, 2025
IQRray
Public
A new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics
R
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GNU General Public License v3.0
•0•1•0•0•Updated Feb 3, 2025Feb 3, 2025
AnnotTool
Public
VBA scripts for Bgee Annotation Tool
VBA
•1•1•0•0•Updated Jan 15, 2024Jan 15, 2024
Methods_RNASeq_expression_calls
Public
RNASeq call method comparison
R
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GNU General Public License v3.0
•0•0•0•0•Updated Apr 5, 2022Apr 5, 2022

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19 repositories