BgeeDB

All

18 repositories

bgee_apps
Public
Source code of the Java Bgee applications
java biology gene-expression
java biology gene-expression
Java
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Creative Commons Zero v1.0 Universal
•1•2•98•1•Updated Mar 12, 2026Mar 12, 2026
bgee_pipeline
Public
Source code of the Bgee pipeline used to build the Bgee database
python java gene
python java gene rna-seq pipeline makefile biology perl gene-expression expression
Perl
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Creative Commons Zero v1.0 Universal
•3•12•13•1•Updated Mar 9, 2026Mar 9, 2026
bgee_web
Public
React code of the Bgee frontend
reactjs biology gene-expression
reactjs biology gene-expression
JavaScript
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Creative Commons Zero v1.0 Universal
•5•1•0•0•Updated Mar 3, 2026Mar 3, 2026
sparql-examples
Public
A set of SPARQL examples that are used in different SIB resources
HTML
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Other
•31•0•0•0•Updated Jan 27, 2026Jan 27, 2026
BgeeCall
Public
Source code of the BgeeCall R package, for automatic RNA-Seq present/absent gene expression calls generation
rna-seq biology gene-expression
rna-seq biology gene-expression scrna-seq rna-seq-libraries intergenic-regions gene-level present-absent-calls
R
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GNU General Public License v3.0
•1•4•1•0•Updated Dec 3, 2025Dec 3, 2025
BgeeDB_R
Public
Source code of the R packge BgeeDB to use data from the Bgee database
bioinformatics rna-seq scrna-seq
bioinformatics rna-seq scrna-seq single-cell enrichment-analysis
R
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GNU General Public License v3.0
•6•16•18•1•Updated Oct 8, 2025Oct 8, 2025
workshop_bc2
Public
HTML
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Creative Commons Zero v1.0 Universal
•0•0•0•0•Updated Sep 16, 2025Sep 16, 2025
Biodiversity-Bioinformatics
Public
Biodiversity Bioinformatics
R
•0•0•0•0•Updated Aug 13, 2025Aug 13, 2025
expression-annotations-documents
Public
Bgee Expression Annotations documentation
Jupyter Notebook
•1•1•0•0•Updated Mar 19, 2025Mar 19, 2025
bgee
Public
Project hosting resources used for developing Bgee.
GNU General Public License v3.0
•0•1•0•0•Updated Feb 3, 2025Feb 3, 2025
anatomical-similarity-annotations
Public
Project hosting resources used for annotating relations of similarity between anatomical structures
Makefile
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Creative Commons Zero v1.0 Universal
•2•2•21•0•Updated Feb 3, 2025Feb 3, 2025
Wikidata_BgeeDB-bot
Public
The BgeeDB Wikidata bot
Python
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Creative Commons Zero v1.0 Universal
•0•1•0•0•Updated Feb 3, 2025Feb 3, 2025
reference_intergenic_standalone
Public
standalone scripts allowing to generate reference intergenic sequences for species not present in Bgee
R
•1•2•0•0•Updated Feb 3, 2025Feb 3, 2025
homology-ontology
Public
Home for the ontology of homology and related concepts in biology
biology ontology uberon
biology ontology uberon homology obofoundry
Makefile
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Creative Commons Zero v1.0 Universal
•1•0•2•1•Updated Feb 3, 2025Feb 3, 2025
confidence-information-ontology
Public
Repository of the Confidence Information Ontology (CIO)
ontology obofoundry confidence-score
ontology obofoundry confidence-score
Perl
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Creative Commons Zero v1.0 Universal
•2•5•2•0•Updated Feb 3, 2025Feb 3, 2025
IQRray
Public
A new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics
R
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GNU General Public License v3.0
•0•1•0•0•Updated Feb 3, 2025Feb 3, 2025
AnnotTool
Public
VBA scripts for Bgee Annotation Tool
VBA
•1•1•0•0•Updated Jan 15, 2024Jan 15, 2024
Methods_RNASeq_expression_calls
Public
RNASeq call method comparison
R
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GNU General Public License v3.0
•0•0•0•0•Updated Apr 5, 2022Apr 5, 2022