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sparql for wikidata provenance/bots

enhancementNew feature or requestNew feature or request

Wikidata

Status: Open.

#9 In openphacts/FederatedPhacts;

· nsjuty opened on Aug 20, 2019

Should we use identifiers.org in between different parts of queries

Status: Open.

#8 In openphacts/FederatedPhacts;

· Chris-Evelo opened on Aug 19, 2019

Meta: do we use "complicated" federated SPARQL queries or do we use simple queries behind an API that are then combined in something else (e.g. Python)

Status: Open.

#6 In openphacts/FederatedPhacts;

· Chris-Evelo opened on Aug 19, 2019

whitelist for external endpoints

Status: Open.

#5 In openphacts/FederatedPhacts;

· pgroth opened on Aug 19, 2019

Does a drug hit any gene product known to be related to a disease

BridgeDbUses BridgeDb (IMS) for ID mappingUses BridgeDb (IMS) for ID mapping

ChEMBLUses ChEMBL as datasourceUses ChEMBL as datasource

DisGeNETUses DisGeNet as a datasourceUses DisGeNet as a datasource

questionFurther information is requestedFurther information is requested

Wikidata

Status: Open.

#4 In openphacts/FederatedPhacts;

· Chris-Evelo opened on Aug 19, 2019

Let me compare MW, logP and PSA for known oxidoreductase inhibitors

ChEMBLUses ChEMBL as datasourceUses ChEMBL as datasource

CRSUses a (to be developed) chemical substructure resolution system to identify compoundsUses a (to be developed) chemical substructure resolution system to identify compounds

IRSWould benefit from an identity resolution service stepWould benefit from an identity resolution service step

questionFurther information is requestedFurther information is requested

Wikidata

Status: Open.

#3 In openphacts/FederatedPhacts;

· egonw opened on Aug 19, 2019

Is process active in a tissue or cell

BridgeDbUses BridgeDb (IMS) for ID mappingUses BridgeDb (IMS) for ID mapping

NextProtUses NextProt as a datasourceUses NextProt as a datasource

PythonUses Python or Python notebook wrappersUses Python or Python notebook wrappers

questionFurther information is requestedFurther information is requested

WikiPathwaysUses WikiPathways as a datasourceUses WikiPathways as a datasource

Status: Open.

#1 In openphacts/FederatedPhacts;

· Chris-Evelo opened on Aug 19, 2019