ENH Expand spm interface thresholding options#3333
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ldeangelisphys wants to merge 4 commits intonipy:masterfrom
Open
ENH Expand spm interface thresholding options#3333ldeangelisphys wants to merge 4 commits intonipy:masterfrom
ldeangelisphys wants to merge 4 commits intonipy:masterfrom
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added 3 commits
May 3, 2021 10:53
The variable use_fwe_correction has been replaced with a multitest_correction variable which can be equal to 'none' for uncorrected threshold, 'FWE' for FWE correction adn 'FDR' for FDR correction
…se_topo_fdr Now there is another varialbe called use_topo_fwe that uses FWEc cluster size correction. Additionally, both FWEc and FDRc are returned to the user as output.
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reviewed
Oct 15, 2021
| contrast_index = traits.Int( | ||
| mandatory=True, desc="which contrast in the SPM.mat to use" | ||
| ) | ||
| use_fwe_correction = traits.Bool( |
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We have to keep the old options around so that we don't break existing workflows. You can deprecate it though (see https://nipype.readthedocs.io/en/latest/devel/interface_specs.html).
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Summary
I added the option of using FDR correction (at the voxel level) and the option to choose between FWEc and FDRc for the clustersize correction (only FDRc was present through use_topo_fdr) to the SPM interface
Fixes # .
List of changes proposed in this PR (pull-request)
Acknowledgment