Description of feature
I've been trying to find documentation specifying which versions of clinvar and gnomad are included in this workflow, and not having a lot of success.
They don't seem to be specified in the GitHub readme, in the hmftools documentation, or in the nfcore documents (at least that I could find).
I did manage to find the date stamp in dna/variants/clinvar.38.vcf.gz, of 2023-05-27, which appears to correspond to https://ftp.ncbi.nlm.nih.gov/pub/clinvar/vcf_GRCh38/weekly/clinvar_20230527.vcf.gz
(And the md5sums do match). But that's a whole lot more sleuthing than should be needed, especially as these change from version to version of oncoanalyser.
And I've had a lot less luck in determining the Gnomad version, as those annotations are simple csvs with no header info.
Thanks!
Description of feature
I've been trying to find documentation specifying which versions of clinvar and gnomad are included in this workflow, and not having a lot of success.
They don't seem to be specified in the GitHub readme, in the hmftools documentation, or in the nfcore documents (at least that I could find).
I did manage to find the date stamp in
dna/variants/clinvar.38.vcf.gz, of 2023-05-27, which appears to correspond to https://ftp.ncbi.nlm.nih.gov/pub/clinvar/vcf_GRCh38/weekly/clinvar_20230527.vcf.gz(And the md5sums do match). But that's a whole lot more sleuthing than should be needed, especially as these change from version to version of oncoanalyser.
And I've had a lot less luck in determining the Gnomad version, as those annotations are simple csvs with no header info.
Thanks!