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Redux 1.2 fails consistently on graph genomes #281

@alexiswl

Description

@alexiswl

Description of the bug

Getting the following when running using a graph genome for the normal bam input

Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-18"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-29"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-21"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-23"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-25"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-16"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-20"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-22"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-17"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-27"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-31"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-19"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-28"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-30"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-24"
Exception: java.lang.OutOfMemoryError thrown from the UncaughtExceptionHandler in thread "Thread-26"
06:42:25.145 [main] [ERROR] thread exception: java.lang.OutOfMemoryError: Java heap space
java.lang.OutOfMemoryError: Java heap space

Command used and terminal output

N/A

Relevant files

Log files
202604022324817b.zip

System information

Nextflow Version 25.10.2
Hardware: Cloud
Executor: Illumina Connected Analytics
Container Engine: Kubernetes
OS: Linux
Oncoanalyser version: 2.2.0

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