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--proteome_referencealso to filter protein or peptide inputenhancementNew feature or requestNew feature or requestStatus: Open.--proteome_referencedoes the opposite of what it is supposed tobugSomething isn't workingSomething isn't workingStatus: Open.Accept 3,4-field HLA types
enhancementNew feature or requestNew feature or requestStatus: Open.- Status: Open.#347 In nf-core/epitopeprediction;
Replace CAT_CAT with FIND_CONCATENATE
enhancementNew feature or requestNew feature or requestStatus: Open.#346 In nf-core/epitopeprediction;- Status: Open.#343 In nf-core/epitopeprediction;
Add HLA-pan prediction functionality
enhancementNew feature or requestNew feature or requestStatus: Open.#340 In nf-core/epitopeprediction;EPYTOPE_VARIANT_PREDICTION fails with pandas ValueError: Ensembl BioMart API returns 1 column instead of expected 3
bugSomething isn't workingSomething isn't workingStatus: Open.#337 In nf-core/epitopeprediction;Add
speclib_outputfor DIA-comatible spectrum library search of neo-epitopesenhancementNew feature or requestNew feature or requestStatus: Open.Add optional flag to use BA_rank as rank metric in output
enhancementNew feature or requestNew feature or requestStatus: Open.- Status: Open.
Add predictors MixMHCpred and MixMHCIIpred
enhancementNew feature or requestNew feature or requestStatus: Open.#316 In nf-core/epitopeprediction;