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mcanouil/README.md

Hi 👋, I am Mickaël!

Ph.D. in Biostatistics · Quarto Wizard · Cinephile

Personal Website of Mickaël Canouil Curriculum vitae of Mickaël Canouil GitHub Sponsor profile of Mickaël Canouil
BlueSky account of Mickaël Canouil LinkedIn account of Mickaël Canouil ORCID record of Mickaël Canouil

A dark blue gradient banner featuring technology logos in two rows. Top row shows Quarto Typst and Quarto Wizard icons separated by plus signs. Bottom row shows R and Python logos with plus signs between them. Below are the words Tools for Reproducible Research with subtitle Quarto Extensions Data Science Open Source. At bottom are four badge labels reading Biostatistics Data Science Quarto Ecosystem and Open Source. Subtle code snippets visible in background corners.

About Me

Senior biostatistician at Alsinova (Astek) and, separately, a freelance developer specialising in the Quarto and R ecosystems. I combine expertise in genetics and multi-omics analysis with open-source development.

Note

Available as a freelance for short-term and extended engagements. Quarto extensions and multi-format pipelines (HTML, Typst/PDF, Reveal.js), R package development, shiny applications, reproducible workflows with Dev Containers and continuous integration, and training. Biostatistics, clinical, and data-analysis work goes through Alsinova rather than my freelance offer.

50 peer-reviewed papers in top-tier journals, including Nature, Nature Genetics, and Diabetes. Eight of those place me as first, co-first, last, or co-last author.

Open Source

Skills

  • Statistics · GWAS & EWAS · Multi-omics · Mixed models · Joint models · Survival analysis · Meta-analysis
  • Languages · R · Lua · Typst · Python · TypeScript · JavaScript · Bash · SQL
  • Publishing · Quarto · Typst · Reveal.js · Pandoc · LaTeX · R Markdown · HTML/(S)CSS
  • Infrastructure · GitHub Actions · GitHub Pages · Docker · Dev Containers · Google Cloud · VS Code / Positron
  • R ecosystem · tidyverse · shiny · devtools · testthat · roxygen2 · Bioconductor · renv · targets

Personal

Away from the keyboard I watch a lot of films (Number of films seen by Mickaël Canouil), about half of them in a theatre, play board games from heavy strategy to party games, and walk Saga, my black Labrador Retriever.

Movies seen in a movie theatre year streak

Pinned Loading

  1. mickael.canouil.fr mickael.canouil.fr Public

    Personal website of Mickaël CANOUIL.

    HTML 41 20

  2. gribouille gribouille Public

    Create elegant graphics with the Grammar of Graphics for Typst.

    Typst 248 5

  3. quarto-wizard quarto-wizard Public

    Quarto Wizard is a Visual Studio Code / Positron extension that assists you in managing extensions in Quarto projects.

    TypeScript 82 6

  4. quarto-extensions quarto-extensions Public

    Quarto Extensions directory via GitHub API.

    Lua 76 39

  5. quarto-codespaces quarto-codespaces Public template

    Quarto Codespaces / Dev Containers setup for quick online testing.

    Shell 39 23

  6. mastering-quarto-cli mastering-quarto-cli Public

    [Workshop] Mastering Quarto CLI: From Authoring to Publishing

    Lua 11 4