immune aging atlas multiresolution and PERMANOVA tutorial - #160
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VladimirShitov merged 10 commits intoMay 28, 2026
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Bump patpy_tutorials submodule; register nbgallery entry and nbsphinx thumbnail. Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
…tion) Co-authored-by: Cursor <cursoragent@cursor.com>
Co-authored-by: Cursor <cursoragent@cursor.com>
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
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Thank you! I'll take a look really soon. Could you also open a pull request with the notebook to the patpy tutorials repo? It became slightly more complicated, see contributing guide on how to handle the new structure :) |
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Just sent it! |
Co-authored-by: Cursor <cursoragent@cursor.com>
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Hi!! Anything I can do to help merge this? |
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Hi! Thanks for pinging, could you check the updated notebook in the tutorials repo? |
…s-multiresolution Co-authored-by: Cursor <cursoragent@cursor.com> # Conflicts: # docs/tutorials/notebooks
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Huh, a test fails for some reason. Anyway, this is not an issue from this PR, merging. |
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This tutorial shows first that label set resolution affects compositional embedding results, and then shows where PERMANOVA can be useful as a metric (it is often used in compositional analysis!), how it is typically used and compares a couple methods.