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fix incorrect secondary alignment in ksw_align#227

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mirounga wants to merge 3 commits intolh3:Apache2from
mirounga:rs_kswfix
Open

fix incorrect secondary alignment in ksw_align#227
mirounga wants to merge 3 commits intolh3:Apache2from
mirounga:rs_kswfix

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@mirounga mirounga commented Dec 5, 2018

ksw_align could pick the maximum row value at the location beyond the query end. This leads to incorrect second best score.

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