Allow larger chunks of reads to be processed, and estimate the insert…#106
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rbh wants to merge 3 commits intolh3:masterfrom
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Allow larger chunks of reads to be processed, and estimate the insert…#106rbh wants to merge 3 commits intolh3:masterfrom
rbh wants to merge 3 commits intolh3:masterfrom
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… size based on all pairs in "bwa mem", once all reads have been processed.
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added 2 commits
August 28, 2017 10:30
Pull changes from lh3
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… size based on all pairs in "bwa mem", once all reads have been processed.
The "-K" option can now be used with large values given enough memory. The special value "0" corresponds to processing all reads in one chunk.
For "bwa mem" without the "-I" option, the insert size is also estimated and printed once all reads have been processed. This gives an estimate that does not depend on the chunk size/number of threads used.