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Use workflows instead of profiles for different pipelines

Status: Open.

#86 In guigolab/grape-nf;

· emi80 opened on Jun 25, 2024

Redefine processing from input BAM files

Status: Open.

#85 In guigolab/grape-nf;

· emi80 opened on Jun 21, 2024

Update RSEM version

Status: Open.

#83 In guigolab/grape-nf;

· emi80 opened on May 3, 2024

Set credibility intervals computation as optional in RSEM module

Status: Open.

#82 In guigolab/grape-nf;

· emi80 opened on May 2, 2024

Modules refactoring

Status: Open.

#81 In guigolab/grape-nf;

· emi80 opened on May 2, 2024

STAR mapping

Status: Open.

#80 In guigolab/grape-nf;

· RamilNurtdinov opened on Aug 6, 2023

Paired end as 'false' in the 'general parameters' log is confusing

Status: Open.

#79 In guigolab/grape-nf;

· emi80 opened on Aug 1, 2023

STAR 2.4.0j with singularity gives segmentation fault error

Status: Open.

#67 In guigolab/grape-nf;

· asalhab opened on Dec 9, 2022

Introduce automated generation of quantification matrix

Status: Open.

#65 In guigolab/grape-nf;

· marangiop opened on Jan 20, 2022

Include FastQC

Status: Open.

#63 In guigolab/grape-nf;

· marangiop opened on Jan 20, 2022

sambamba-sort: couldn't parse --memory-limit option

Status: Open.

#60 In guigolab/grape-nf;

· jpang-van opened on Feb 15, 2021

Update readme with a section describing output files

Status: Open.

#58 In guigolab/grape-nf;

· emi80 opened on Jan 4, 2021