Fix issue #40. Edited meshing module 2-8 pages.#41
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francoisdh wants to merge 2 commits intomasterfrom
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Fix issue #40. Edited meshing module 2-8 pages.#41francoisdh wants to merge 2 commits intomasterfrom
francoisdh wants to merge 2 commits intomasterfrom
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francoisdh
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Jul 2, 2018
francoisdh
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- Solves a few problems described in issue Meshing modules documentation problems #40,
- improves some code snippets,
- corrects a few typos.
- docs/modules/ROOT/pages/meshing/module-2-surface-from-image.adoc
- docs/modules/ROOT/pages/meshing/module-3-centerlines-gui-tool.adoc
- docs/modules/ROOT/pages/meshing/module-4-centerlines-computing.adoc
- docs/modules/ROOT/pages/meshing/module-5-centerlines-merging.adoc
- docs/modules/ROOT/pages/meshing/module-6-image-generation.adoc
- docs/modules/ROOT/pages/meshing/module-7-surface-remeshing.adoc
- docs/modules/ROOT/pages/meshing/module-8-volume-meshing.adoc
francoisdh
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type:bug
prudhomm
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Jul 3, 2018
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thanks for the work.
options should probably go in a table with
- option name,
- option default value
- option description
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| The goal here is to extract and create a 3D model of the surface of the blood vessels, using a level set method. | ||
| The level sets are initialiazed using either the isosurface of a given intensity value (*isosurface* method) or a given intensity range (*threshold* method). | ||
| The goal here is to extract and create a 3D model of the surface of the blood |
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The goal of this module is to extract...
| The level sets are initialiazed using either the isosurface of a given intensity value (*isosurface* method) or a given intensity range (*threshold* method). | ||
| The goal here is to extract and create a 3D model of the surface of the blood | ||
| vessels, using a level set method. | ||
| The level sets are initialiazed using either the isosurface of a given intensity |
| (see link:Building.adoc[the building page]) | ||
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| Simply run this command or put it in your `.bashrc` (which is more convenient for repeated use). | ||
| Simply run this command or put it in your `.bashrc` (which is more convenient |
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Run the following command or add it in $HOME/.bashrc
| Simply run this command or put it in your `.bashrc` (which is more convenient | ||
| for repeated use). | ||
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| `source $INSTALL/bin/setupAngioTKEnvironment.sh` |
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use
source $INSTALL/bin/setupAngioTKEnvironment.sh
| - `--input.point-pair.path` (optional) specifies the point pairs file | ||
| (typically: previously saved work) | ||
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| Thus, the typical command shoud be: |
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| We first need to compute each center line using both the extracted surface and the corresponding point pairs (which shoud have been defined in the first place, using link:Module_3_CenterlinesGUITool.adoc[the center lines editing tool]) | ||
| We first need to compute each center line using both the extracted surface and | ||
| the corresponding point pairs (which shoud have been defined in the first place, |
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which have been defined using ...
| We first need to compute each center line using both the extracted surface and the corresponding point pairs (which shoud have been defined in the first place, using link:Module_3_CenterlinesGUITool.adoc[the center lines editing tool]) | ||
| We first need to compute each center line using both the extracted surface and | ||
| the corresponding point pairs (which shoud have been defined in the first place, | ||
| using link:Module_3_CenterlinesGUITool.adoc[the center lines editing tool]). |
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use xref !!! the link here won't work
| `open-surface.radius-uncertainty` and `gmsh.nb-points-in-circle` | ||
| - (Very rarely) A crash of unknown cause. | ||
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| link:Meshing_Module_Description.adoc[Go back to The Meshing Module] |
| simulations. | ||
| We will also generate mesh input and output markers in a description file | ||
| (.desc). | ||
| The executable we use is named `meshing_volumefromstlandcenterlines`. |
| A solution is to split each connected component apart and to process them all | ||
| separately. | ||
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| link:Meshing_Module_Description.adoc[Go back to The Meshing Module] |
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use xref.
have a What next? section
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