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{bio}[foss/2024a] STAR-Fusion 1.15.1 #25251

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{bio}[foss/2024a] STAR-Fusion 1.15.1 #25251

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{bio}[foss/2024a] STAR-Fusion 1.15.1
fizwit Feb 10, 2026
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Update easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-1.15.1-foss-20…
fizwit May 21, 2026
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36 changes: 36 additions & 0 deletions easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-1.15.1-foss-2024a.eb
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
# Author: Pablo Escobar Lopez
# sciCORE - University of Basel
# SIB Swiss Institute of Bioinformatics
# rewrite 2023-08-07 John Dey - Fred Hutch Cancer Center - Seattle US

easyblock = 'Tarball'

@Crivella Crivella Feb 16, 2026

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I see the main executable is a Perl script, but there seems to be the possibility to also build other plugins from the docs

Should we also try to add the deps needed to run Make so we ship a more complete version??


name = 'STAR-Fusion'
version = '1.15.1'

homepage = 'https://github.com/STAR-Fusion/STAR-Fusion'
description = """STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts
supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner
to map junction reads and spanning reads to a reference annotation set."""

toolchain = {'name': 'foss', 'version': '2024a'}

source_urls = ['https://github.com/STAR-Fusion/STAR-Fusion/archive/refs/tags']
sources = ['%(name)s-v%(version)s.tar.gz']
checksums = ['bd7b0e38b6736b33d9c01efcbc01d7fc59d55201360a889bff43474c35fd0ce6']
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dependencies = [
('Perl', '5.38.2'),
('STAR', '2.7.11b'),
]
Comment on lines +23 to +26

@PhoenixEmik PhoenixEmik May 21, 2026 •
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To build STAR-Fusion after unpacking, these dependencies are required.

Suggested change
dependencies = [
('Perl', '5.38.2'),
('STAR', '2.7.11b'),
]
dependencies = [
('Perl', '5.38.2'),
('Perl-bundle-CPAN', '5.38.2'),
('DB_File', '1.859'),
('STAR', '2.7.11b'),
('SAMtools', '1.21'),
('R', '4.4.2'),
('R-bundle-CRAN', '2024.11'),
]


sanity_check_paths = {
'files': ['STAR-Fusion'],
'dirs': []
}

@PhoenixEmik PhoenixEmik May 21, 2026

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See https://github.com/STAR-Fusion/STAR-Fusion/wiki/installing-star-fusion

After unpacking the tar.gz file, run 'make' in the base installation directory.

Suggested change
postinstallcmds = ["cd %(installdir)s && make"]

sanity_check_commands = ['%(name)s --version']
modextrapaths = {'PATH': ['']}

moduleclass = 'bio'