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scGPT loss weights

Status: Open.

#353 In bowang-lab/scGPT;

· chansigit opened on Jul 6, 2026

torchtext is Deprecated

Status: Open.

#352 In bowang-lab/scGPT;

· DarioS opened on Jun 2, 2026

Generative fine-tuning

Status: Open.

#349 In bowang-lab/scGPT;

· DruncBread opened on Mar 1, 2026

Question about the condition tokens

Status: Open.

#348 In bowang-lab/scGPT;

· lileicaca opened on Feb 6, 2026

Resource or guidelines for train custom mouse model

Status: Open.

#347 In bowang-lab/scGPT;

· zjsyj opened on Jan 10, 2026

Fine-tuning predicts only one cell type label regardless of input data

Status: Open.

#345 In bowang-lab/scGPT;

· Echozhao225 opened on Dec 15, 2025

Discrepancy between Supplementary Table 4 and Multi-omics tutorial results

Status: Open.

#343 In bowang-lab/scGPT;

· nc1m opened on Nov 12, 2025

Subject: Inquiry about ground truth labels for scGPT evaluation datasets (MS & Pancreas)

Status: Open.

#341 In bowang-lab/scGPT;

· mewjjjjn opened on Nov 11, 2025

Clarification on attention mask "order of prediction" and location of iterative selection code

Status: Open.

#338 In bowang-lab/scGPT;

· nc1m opened on Oct 29, 2025

Are any of the models listed in the README trained on CITE-seq?

Status: Open.

#337 In bowang-lab/scGPT;

· immunai-alyssam opened on Oct 24, 2025

Can the pretrained scGPT model be applied to bulk RNA-seq data (~10k samples)?

Status: Open.

#336 In bowang-lab/scGPT;

· aaaaaaaaaayong opened on Oct 14, 2025

Metrics discrepancy between Tutorial_Multiomics.ipynb and Supplementary Table 4

Status: Open.

#335 In bowang-lab/scGPT;

· nc1m opened on Oct 10, 2025