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updating to current status
1. The problem was that 1. all spin Echo has to have both AP and PA as Intended for 2. For whatever reason the Phase Encoding Directin comes out incorrect in the metatag for field maps, that is why we need this modification (both "j-" 3. In the future conversion to check if files that has Intended For exists or not.
THe code runs the ZHH classifier at 1 2 5 10 20 30 40 50 threshold in addition to HCP 10 threshold. Thsi will be build into amiklos/hcppipeline:4.11
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This would be a nice addition! |
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This implements ICA FIX. However in run.py line 370-375 modification was needed only for our site (was not reading this metatag correctly), so do not merge that (maybe a better way to do it).
ICA FIX was tested works fine with provided classifier on our HCP like data.