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senseibelbi merged 1 commit into from
Jul 27, 2026
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docs: register Epigenomics MCP v0.2.1 #7

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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -40,7 +40,7 @@ See the official MCP docs/spec: https://modelcontextprotocol.io/
| **Direct-Use Exposure MCP** | Auditable deterministic external-dose scenario construction, jurisdictional comparison, PBPK-ready handoff packaging | Versioned defaults, packaged archetypes, bounded worker/exchange surfaces | Python 3.12+; local install from repo release assets | Available now | [Repo](https://github.com/ToxMCP/direct-use-exposure-mcp) |
| **Dietary Exposure MCP** | Food-mediated oral exposure screening, governed residue and consumption review, and PBPK-ready oral dose handoffs | Versioned defaults plus governed residue, consumption, reference-value, legal, and source registries | Python 3.12+; install the verified wheel from GitHub release assets; local stdio operation | Available now (`v0.1.0`; **screening only**) | [Repo](https://github.com/ToxMCP/dietary-exposure-mcp) / [Release](https://github.com/ToxMCP/dietary-exposure-mcp/releases/tag/v0.1.0) |
| **Environmental Fate MCP** | Environmental release-to-concentration screening, scientific review, erosion/sediment transport screening, and downstream regulatory handoff packaging | Versioned defaults, packaged schemas/examples, release artifacts, and optional normalized external payloads | Python 3.12+; local install from repo release assets | Available now (`v0.5.0`) | [Repo](https://github.com/ToxMCP/environmental-fate-mcp) / [Release](https://github.com/ToxMCP/environmental-fate-mcp/releases/tag/v0.5.0) |
| **Epigenomics MCP** | Processed epigenomic feature qualification, scientific review, and Bioactivity-PoD handoff packaging | Processed feature, design, and provenance inputs; packaged GEO fixture; optional external integration clients | Node.js 20+; local stdio or loopback HTTP; no API key for core workflows | Available now (`v0.2.0`; **qualification and handoff only**) | [Repo](https://github.com/ToxMCP/epigenomics-mcp) / [Release](https://github.com/ToxMCP/epigenomics-mcp/releases/tag/v0.2.0) |
| **Epigenomics MCP** | Processed epigenomic feature qualification, scientific review, and Bioactivity-PoD handoff packaging | Processed feature, design, and provenance inputs; packaged GEO fixture; optional external integration clients | Node.js 20+; local stdio or loopback HTTP; no API key for core workflows | Available now (`v0.2.1`; **qualification and handoff only**) | [Repo](https://github.com/ToxMCP/epigenomics-mcp) / [Release](https://github.com/ToxMCP/epigenomics-mcp/releases/tag/v0.2.1) |
| **Bioactivity-PoD MCP** | Coming soon | Coming soon | Coming soon | Coming soon | [Repo](https://github.com/ToxMCP/bioactivity-pod-mcp) |

## Getting Started
Expand Down Expand Up @@ -71,7 +71,7 @@ The fastest way to get productive with ToxMCP is:

The direct-use, dietary, and environmental-fate exposure layers are now public. `Direct-Use Exposure MCP` covers deterministic product-use external-dose screening; `Dietary Exposure MCP v0.1.0` covers food-mediated oral screening and governed evidence handoffs; and `Environmental Fate MCP` covers bounded environmental release-to-concentration screening. Each remains a bounded screening service rather than a final safety or regulatory decision engine.

`Epigenomics MCP v0.2.0` is also public as a qualification-and-handoff layer for already processed epigenomic evidence. It does not perform raw sequencing, methylation calling, causal inference, clinical interpretation, or final regulatory decision-making.
`Epigenomics MCP v0.2.1` is also public as a qualification-and-handoff layer for already processed epigenomic evidence. It does not perform raw sequencing, methylation calling, causal inference, clinical interpretation, or final regulatory decision-making.

## Docs

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2 changes: 1 addition & 1 deletion docs/choosing-a-module.md
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Expand Up @@ -71,7 +71,7 @@ A quick guide for first-time users.
for Bioactivity-PoD workflows. It does not process raw sequencing data or make
causal, clinical, safety, or regulatory conclusions.
- https://github.com/ToxMCP/epigenomics-mcp
- Current release: https://github.com/ToxMCP/epigenomics-mcp/releases/tag/v0.2.0
- Current release: https://github.com/ToxMCP/epigenomics-mcp/releases/tag/v0.2.1

## Coming soon in the stack

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