fixed issue in 03_index that required a sorted bam file before indexing#17
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JenniferNeumaier wants to merge 1 commit into
Open
fixed issue in 03_index that required a sorted bam file before indexing#17JenniferNeumaier wants to merge 1 commit into
JenniferNeumaier wants to merge 1 commit into
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Fixing issue where samtools index failed because of unsorted bam outputs from previous steps. Added a
samtools sortstep to fix the issue as well as cleaning steps for proper file naming.