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fix: params.star_sort_by_coordinate default Unsorted#16

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15-removal-of---outsamtype-bam-sorted-by-coordinate
Apr 8, 2026
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fix: params.star_sort_by_coordinate default Unsorted#16
LKress merged 1 commit into
masterfrom
15-removal-of---outsamtype-bam-sorted-by-coordinate

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@JenniferNeumaier JenniferNeumaier commented Apr 8, 2026

STAR does not support no specificaction of BAM output format. Needs either Unsorted or SortedByCoordinate; therefore set default to Unsorted.

@JenniferNeumaier JenniferNeumaier linked an issue Apr 8, 2026 that may be closed by this pull request
@JenniferNeumaier JenniferNeumaier requested a review from LKress April 8, 2026 14:23
@LKress LKress merged commit aba992a into master Apr 8, 2026
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removal of --outSAMtype BAM Sorted by Coordinate

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