This repository contains the supplementary files accompanying the preprint:
Net conversion calculations of catabolic pathways. Preprint. DOI: [DOI PLACEHOLDER]
The files provide the linear algebra method, the elementary flux mode (EFM) calculations, and the Max-Min Driving Force (MDF) analysis used in the manuscript. Excel files contain the stoichiometric data; the corresponding Python files reproduce the calculations and figures.
| File | Description |
|---|---|
| S1 | Linear algebra method (Python) |
| S2 | Excel file, 1 EFM |
| S3 | Python file, 1 EFM |
| S4 | Excel file, 8 EFMs |
| S5 | Python file, 8 EFMs |
| S6 | Excel file, 24 EFMs |
| S7 | Python file, 24 EFMs |
| S8 | MDF analysis (Python) |
If you use these files, please cite the preprint above.