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Original proteingym MSAs contain letter codes not supported by the current MSAProteinSequence class
refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.Add sequence weighting calculation code
PG-twoRelated to the ProteinGym2 paperRelated to the ProteinGym2 paperrefineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.Additional Structure metadata storage
PG-twoRelated to the ProteinGym2 paperRelated to the ProteinGym2 paperrefineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.Add support for validation sets to quantile splitter
refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.keying subset splits to identify test set
PG-frameworkRelated to the Foundations/Framework paperRelated to the Foundations/Framework paperrefineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.Clean notebooks of technical jargon
PG-frameworkRelated to the Foundations/Framework paperRelated to the Foundations/Framework paperrefineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.internal consistency - biotite or biopython
PG-frameworkRelated to the Foundations/Framework paperRelated to the Foundations/Framework paperPG-twoRelated to the ProteinGym2 paperRelated to the ProteinGym2 paperStatus: Open.#464 In ProteinGym/proteingym-base;proteingym-base lacks model schema definitions
refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.MSA documentation out of data with MSA features
refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.Different length weights / msa
refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.#452 In ProteinGym/proteingym-base;Bug: (refine) reference_sequence StopIteration
refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.#451 In ProteinGym/proteingym-base;How to handle indels?
PG-twoRelated to the ProteinGym2 paperRelated to the ProteinGym2 paperrefineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upStatus: Open.