SeriesZoom is one of several tools developed by the Nesys laboratory, University of Oslo and participating to EBRAINS with the aim of facilitating brain atlas based analysis and integration of experimental data and knowledge about the human and rodent brain. SeriesZoom is a online viewer, typically used for high resolution histological images. Building on the open standard Deep Zoom Image (DZI) format, it is able to efficiently visualise very large brain images in the gigapixel range, allowing to zoom from common, display-sized overview resolutions down to the microscopic resolution without downloading the underlying very large image dataset. SeriesZoom is currently used internally to serve EBRAINS dataset card service links.
v0.7
- Programming: Gergely Csucs
- Conception, design, validation: Maja Puchades, Sharon Yates, Jan Bjaalie.
- Source code: MIT License
SeriesZoom (RRID:SCR_026908)
- Puchades MA, Yates SC, Csucs G, Carey H, Balkir A, Leergaard TB, Bjaalie JG. Software and pipelines for registration and analyses of rodent brain image data in reference atlas space. Front Neuroinform. 2025 Sep 24;19:1629388. https://doi.org/10.3389/fninf.2025.1629388
SeriesZoom is developed by the Neural Systems Laboratory at the Institute of Basic Medical Sciences, University of Oslo, Norway. SeriesZoom was developed with support from the EBRAINS infrastructure, and funding from the European Union’s Horizon Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 101147319 (EBRAINS 2.0).
Report issues here on github or email: support@ebrains.eu