Skip to content
@NLM-DIR

NLM Division of Intramural Research

Popular repositories Loading

  1. TPMCalculator TPMCalculator Public

    TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

    C++ 136 34

  2. vadr vadr Public

    Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

    Perl 114 27

  3. BAMscale BAMscale Public

    BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

    C 73 17

  4. pm4ngs pm4ngs Public

    Project Manager for NGS data analysis

    Python 31 10

  5. ribovore ribovore Public

    Perl 17 5

  6. gtax gtax Public

    GTax python package provides tools for the creation of the GTax sequence-based database. This database includes one assembly per organism deposited in the NCBI Genomes database.

    Python 7 4

Repositories

Showing 10 of 13 repositories
  • ribovore Public
    NLM-DIR/ribovore’s past year of commit activity
    Perl 17 5 3 0 Updated Jan 29, 2026
  • TPMCalculator Public

    TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

    NLM-DIR/TPMCalculator’s past year of commit activity
    C++ 136 34 15 0 Updated Jan 28, 2026
  • gtax Public

    GTax python package provides tools for the creation of the GTax sequence-based database. This database includes one assembly per organism deposited in the NCBI Genomes database.

    NLM-DIR/gtax’s past year of commit activity
    Python 7 4 2 0 Updated Jan 28, 2026
  • pm4ngs Public

    Project Manager for NGS data analysis

    NLM-DIR/pm4ngs’s past year of commit activity
    Python 31 10 0 0 Updated Jan 27, 2026
  • vadr Public

    Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

    NLM-DIR/vadr’s past year of commit activity
    Perl 114 27 8 0 Updated Jan 9, 2026
  • BAMscale Public

    BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

    NLM-DIR/BAMscale’s past year of commit activity
    C 73 17 1 1 Updated Dec 4, 2024
  • histonedb Public
    NLM-DIR/histonedb’s past year of commit activity
    JavaScript 3 10 0 4 Updated Apr 5, 2024
  • NLM-DIR/pm4ngs-chipseq’s past year of commit activity
    Jupyter Notebook 0 3 1 0 Updated Jun 21, 2023
  • NLM-DIR/pm4ngs-transcriptome-annotation’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Oct 25, 2021
  • NLM-DIR/pm4ngs-chipexo’s past year of commit activity
    Jupyter Notebook 1 3 0 0 Updated Jul 7, 2021

Top languages

Loading…

Most used topics

Loading…