GEOPY-2602: Validate grid size for clipping 2D grids for a given amount of RAM

[MatthieuCMira]

GEOPY-2602 - Validate grid size for clipping 2D grids for a given amount of RAM
catch memory error.

I changed a bit the error messages too....

[codecov]

Codecov Report

❌ Patch coverage is 91.30435% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 91.09%. Comparing base (c0aebed) to head (8a82284).

Files with missing lines	Patch %	Lines
geoh5py/io/h5_reader.py	87.50%	1 Missing and 1 partial ⚠️
geoh5py/shared/exceptions.py	93.33%	1 Missing and 1 partial ⚠️

Additional details and impacted files

@@                Coverage Diff                 @@
##           release/GA_4.8     #879      +/-   ##
==================================================
- Coverage           91.11%   91.09%   -0.02%     
==================================================
  Files                 113      113              
  Lines               10460    10459       -1     
  Branches             1931     1933       +2     
==================================================
- Hits                 9531     9528       -3     
- Misses                492      493       +1     
- Partials              437      438       +1     

Files with missing lines	Coverage Δ
geoh5py/shared/utils.py	91.14% <ø> (+0.36%)	⬆️
geoh5py/ui_json/ui_json.py	88.18% <ø> (ø)
geoh5py/io/h5_reader.py	96.22% <87.50%> (-0.75%)	⬇️
geoh5py/shared/exceptions.py	97.14% <93.33%> (-2.86%)	⬇️

... and 1 file with indirect coverage changes

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[Copilot]

Pull request overview

This PR primarily improves robustness around large HDF5 dataset reads by pre-checking available system memory (and surfacing a clearer custom exception), while also refactoring UI JSON handling (dependency/group enablement, promotion/validation) and updating/expanding the test suite accordingly.

Changes:

• Add safe_load_dataset with memory pre-check + MemoryValidationError, and add psutil dependency to support this.
• Refactor BaseUIJson / UI JSON validation + form behaviors (dependencies, enabled-state propagation, flattening/promotion, updated error messages).
• Expand and adjust tests across UI JSON, input-file utilities, referenced data maps, and dataset loading.

Reviewed changes

Copilot reviewed 22 out of 25 changed files in this pull request and generated 4 comments.

Show a summary per file

File	Description
tests/utils_test.py	Adds coverage for enum_name_to_str utility behavior.
tests/ui_json/uijson_test.py	Refactors UI JSON tests to new enablement/dependency logic and adds new scenarios (group + dependency enablement, copy_relatives).
tests/ui_json/forms_test.py	Updates form tests for changed value/serialization/flatten semantics (Data*, MultiSelect, DataRange).
tests/safe_load_dataset_test.py	New unit tests validating safe_load_dataset success/failure paths and error messaging.
tests/reference_data_test.py	Adjusts referenced data map copy/rename expectations.
tests/input_file_utils_test.py	New tests for UI JSON utility functions (flatten/collect/enabled/group behavior).
tests/input_file_test.py	New comprehensive InputFile tests covering promotions, validations, serialization, and copy behaviors.
recipe.yaml	Sets placeholder package version for build replacement.
pyproject.toml	Adds psutil runtime dependency.
poetry.lock	Updates lockfile (Poetry generator version + psutil resolved).
geoh5py/ui_json/validation.py	Refactors UIJson cross-validations to operate on BaseUIJson/forms rather than raw dicts; adds promotion helper.
geoh5py/ui_json/ui_json.py	Major refactor of UIJson read/from-dict/infer, enabled/dependency mechanics, cross-validation and copy_relatives support.
geoh5py/ui_json/input_file.py	Minor typing fix when passing stringify() output into InputFile.
geoh5py/ui_json/forms.py	Updates form optional/enabled semantics, DataForm value typing, and adds flatten/set_value support for grouped/range forms.
geoh5py/ui_json/annotations.py	Adjusts serializers/validators (enum serialization, workspace/path handling, UUID list typing).
geoh5py/shared/validators.py	Removes unused types_to_string helper (serializer path changed).
geoh5py/shared/utils.py	Expands stringify mappings, updates str2none, extends enum_name_to_str, adds type2uuid.
geoh5py/shared/exceptions.py	Unifies validation errors under BaseValidationError and introduces MemoryValidationError.
geoh5py/objects/surveys/magnetics.py	Adds GroundMagnetics survey object type.
geoh5py/objects/surveys/gravity.py	Replaces prior accidental content with survey object definitions for gravity.
geoh5py/objects/init.py	Exports new gravity/magnetics survey classes.
geoh5py/io/h5_reader.py	Adds safe_load_dataset and uses it when loading array-like attributes to avoid MemoryError crashes.
geoh5py/data/referenced_data.py	Makes remove_data_map operate on a copied mapping to avoid in-place mutation issues.
geoh5py/data/geometric_data.py	Adds name setter that updates on-file attributes and keeps referenced data-map keys in sync.
geoh5py/data/data_type.py	Adds parent-reference renaming support and updates value-map lookup to use data_map ordering.

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[Copilot]

Pull request overview

Copilot reviewed 4 out of 5 changed files in this pull request and generated 4 comments.

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