Not Valid DIA Data ERROR

[jbettinger91]

When running DIA data generated on a QExactive I get the following error after initializing the RawFileManager
ERROR: Please check if this is a valid DIA data set.

1. This could be DDA data?
2. Is it DIA data where the order of windows is not the same in each cycle?
3. Might be due to DIA data where the cycle does not start at beginning of file but e.g. only after a series of blank scans.

AlphaDIA has a strict definition of DIA cycles: same order of scans within a cycle and the cycle must appear throughout the whole file without gaps.

I have checked the raw files and found a consistent cycle and no blank scans

[mschwoer]

Hi,

can you check if the issue still occurs with the latest version?
If so, could you share the respective raw file?

best,
Magnus